BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0004.p (206 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA2165 [K] COG1309 Transcriptional regulator 94 2e-19 L108801 [K] COG1309 Transcriptional regulator 84 1e-16 SA2379 [K] COG1309 Transcriptional regulator 78 1e-14 BH0719 [K] COG1309 Transcriptional regulator 77 1e-14 L103086 [K] COG1309 Transcriptional regulator 66 3e-11 >SA2165 [K] COG1309 Transcriptional regulator Length = 207 Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 14/201 (6%) Query: 6 DLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEKMEDQ 65 D R+ +TK I +AF L++EK LE + +R +T++A INRGTFYLHY+D Y L+ MED+ Sbjct: 4 DRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLLADMEDE 63 Query: 66 IIEEMNALPARTIPEQLLGSGSVEEPFPSIVEFI-----RFMNGRHRFFAIFFAQEGTSF 120 I E+ LL S+E+ + V I + ++ F+ E TS Sbjct: 64 YISELTTYTQF----DLLRGSSIEDIANTFVNNILKNIFQHIHDNLEFYHTILQLERTS- 118 Query: 121 GKRLRTLIHSRMYEKLPRQ-AFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPPEQ 179 +L I+ + + R + N VP+ Y +Y S A +I++W + + ++ Sbjct: 119 --QLELKINEHIKNNMQRYISINHSIGGVPEMYFYSYVSGATISIIKYWVMDKQPISVDE 176 Query: 180 VALILTRLVRDGPL-LTALNR 199 +A + ++ +GPL + A NR Sbjct: 177 LAKHVHNIIFNGPLRIMAENR 197 >L108801 [K] COG1309 Transcriptional regulator Length = 204 Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 12/199 (6%) Query: 1 MEKAADLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLME 60 M K+ DLRV RT+KLI +AF L+ +K E ++++ + A INR TFY HY D DL + Sbjct: 1 MVKSDDLRVKRTRKLISQAFFGLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYD 60 Query: 61 KMEDQIIEEMNALPARTIPEQLLGSGS------VEEPFPSIVEFIRFMNGRHRFFAIFFA 114 + DQ + + + EQ L G+ +E EF+R + I Sbjct: 61 SLIDQFLASFTGI----LDEQNLVDGNNVHVKEIETVLSRFYEFVR--DNPEIAQMITDR 114 Query: 115 QEGTSFGKRLRTLIHSRMYEKLPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRT 174 R ++ R E + + VP+D++++Y SS G + W + Sbjct: 115 AHDQRLKNRFLEILSERYTELFEKLEVREKDVVVPNDFVISYISSILVGTLDWWVSTSTQ 174 Query: 175 LPPEQVALILTRLVRDGPL 193 + A ++ +L+ +G L Sbjct: 175 MSARDFAHLIIKLISNGHL 193 >SA2379 [K] COG1309 Transcriptional regulator Length = 195 Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 17/194 (8%) Query: 6 DLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEKMEDQ 65 D R+ +++ + AF+ L+ + LE + V+ + A +NR TFY HY D YDL+EK+EDQ Sbjct: 4 DRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKLEDQ 63 Query: 66 IIEEMNALPARTIPEQLLGSG--SVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGTSFGKR 123 +EE+ E+L G+ S + + I + F+ + F GK Sbjct: 64 QLEEIRDFIH---DEKLNGAVKLSTDNIHQIMTVLIDMIEKDIAFYQLMF-----RMGK- 114 Query: 124 LRTLIHSRMYE----KLPRQAFNPDAL-AVPDDYIVAYFSSAHFGVIRHWFESGRTLPPE 178 + IH ++Y+ L R D + +P Y ++Y S A +IRHW E + Sbjct: 115 -DSNIHEKLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSLIRHWVEDPNRIDKV 173 Query: 179 QVALILTRLVRDGP 192 + + +V GP Sbjct: 174 DLIMHFNTIVNQGP 187 >BH0719 [K] COG1309 Transcriptional regulator Length = 188 Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 1 MEKAADLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLME 60 M D R T+ L+ E+ + L++EK L + ++ + A INR TFY HY D+YDL+ Sbjct: 1 MSVKLDRRKKYTRMLLKESLMKLMQEKPLSNITIKEICDLADINRSTFYSHYTDLYDLLY 60 Query: 61 KMEDQIIEEMN-ALPARTIPEQLLGSGSVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGT- 118 ++ED+II++++ AL + + EE + ++ F++ G Sbjct: 61 QIEDEIIKDLSEALSSYNYTKD-------EEALQMTENLLVYIANNRESCQTLFSEYGDP 113 Query: 119 SFGKRLRTLIHSRMYEK-LPRQAFNPDALAVPDDYIVAYFSSAHFGVIRHWFESGRTLPP 177 SF K++ L H + + L + PD +Y+ Y + +++ W ++G P Sbjct: 114 SFQKKVMMLAHDHVIKTPLVGKHTKPDI----SEYVSLYIVNGSIHIVQSWLKNGLKQSP 169 Query: 178 EQVALILTRLVRDG 191 +++A ++ +L G Sbjct: 170 KEMAELIIKLGNRG 183 >L103086 [K] COG1309 Transcriptional regulator Length = 177 Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 26/193 (13%) Query: 4 AADLRVIRTKKLIDEAFLSLVEEKGLEGVNVRSLTSKAGINRGTFYLHYQDIYDLMEKME 63 + D R RTK + +A + L+ EK + ++ L A ++R +FY HYQD YD++E + Sbjct: 2 SNDSRKDRTKLQLRDAMIQLLGEKSFDQISTTELVKLAKVSRSSFYTHYQDKYDMIEAYQ 61 Query: 64 DQIIEEMNALPARTIPEQLLGSGSVEEPFPSIVEFIRFMNGRHRFFAIFFAQEGTSFGKR 123 ++ E + + + +G++ +++E F+ G ++ +A ++ G+ Sbjct: 62 RRLFETIQYVFEK-------NNGNIH---ATMLETFEFLKG-NQIYAALLSENGSK---- 106 Query: 124 LRTLIHSRMYEKLP---RQAFNPDALAVP-----DDYIVAYFSSAHFGVIRHWFESGRTL 175 IH M +KL + +F P + + + Y Y+++A FG + W + Sbjct: 107 ---EIHQFMLQKLKELIQSSFFPQSKHLKLGKLGEIYATTYYANAIFGTTQSWIRRKQKE 163 Query: 176 PPEQVALILTRLV 188 P Q+A +L L+ Sbjct: 164 TPTQIANLLVELI 176 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,738,894 Number of extensions: 655936 Number of successful extensions: 1440 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 1435 Number of HSP's successfully gapped: 12 Length of query: 206 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 105 Effective length of database: 26,729,697 Effective search space: 2806618185 Effective search space used: 2806618185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 113 (48.1 bits)