BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0568.0008.p (424 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SSO3201 [R] COG2041 Sulfite oxidase and related enzymes 129 9e-30 SMb20584 [R] COG2041 Sulfite oxidase and related enzymes 121 2e-27 all3673 [R] COG2041 Sulfite oxidase and related enzymes 108 2e-23 DR0716 [R] COG2041 Sulfite oxidase and related enzymes 96 1e-19 mlr0879 [R] COG2041 Sulfite oxidase and related enzymes 89 1e-17 >SSO3201 [R] COG2041 Sulfite oxidase and related enzymes Length = 199 Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 1/162 (0%) Query: 253 SFRVYTVTDIPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHCVTGWSVYKN 312 +F VY IP + + + G V+ ++ +EE +KL R+ V DFHCVTGWS+ Sbjct: 15 NFIVYAEFGIPEVNLETYRLKVSGEVENSLSFTYEELMKLPRKEIVEDFHCVTGWSIKSV 74 Query: 313 TWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVMHDGKPIPNQ 372 WEG+P L++MA V + V FYS DG YT + ++V+VA+ +G+ +P + Sbjct: 75 KWEGIPFKLLIEMAKVKNKVNWVMFYSLDG-YTSIIPFEDLLKDNVIVALFMNGEKLPLK 133 Query: 373 LGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDK 414 G P R + P +YA+KS KWL IE I + GYWE+RGY + Sbjct: 134 HGFPARPIIPHLYAWKSAKWLTEIEFIKDYVDGYWEERGYHE 175 >SMb20584 [R] COG2041 Sulfite oxidase and related enzymes Length = 239 Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 263 PAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHCVTGWSVYKNTWEGLPLAKL 322 P + W + GLV+ + +W F L + +SD HCVT WS Y N W G+ L Sbjct: 76 PHLTHETWRLDVTGLVENPLSLDWNAFQALPQSDSLSDIHCVTTWSRYDNNWRGVSTRDL 135 Query: 323 LDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVMHDGKPIPNQLGGPVRLVTP 382 LD +AA V S DG YT +L LA ED ++A +G PI GGP+RLV P Sbjct: 136 LDRVMPKPEAAYVMLTSFDG-YTTNLPLADFAAEDAILATAWEGAPITRAHGGPMRLVVP 194 Query: 383 QMYAYKSVKWLNRIELIDEDHVGYWEQRGYDK--DAWL 418 +Y +KS KWL RI+ D G+WE+ GY D WL Sbjct: 195 HLYFWKSAKWLQRIDFRAADSAGFWERNGYHMRGDPWL 232 >all3673 [R] COG2041 Sulfite oxidase and related enzymes Length = 196 Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 3/174 (1%) Query: 241 DSAPPVGGGAEGSFRVYTVTDIPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSD 300 D PP A+G F V T P W F + GL + + W +F+ L +D Sbjct: 15 DRVPPGQHLAKG-FPVLTYGAAPKVSLDGWEFRVWGLA-KPAVFTWSDFMNLPHNEFTAD 72 Query: 301 FHCVTGWSVYKNTWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMV 360 FHCVT WS W G+ + +++ V +AA V + G YT ++ +A E+ Sbjct: 73 FHCVTRWSKLDVKWTGIKVTDFINLIEVDSKAAHVMEHCYGG-YTTNIAMADFVREENFF 131 Query: 361 AVMHDGKPIPNQLGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGYDK 414 A G+ +P++ GGP+RLV P +YA+KS KW+N +E +D++ +G+WE+ GY + Sbjct: 132 AFKLFGEDLPSEHGGPMRLVVPHLYAWKSAKWINGLEFLDQEELGFWERNGYHR 185 >DR0716 [R] COG2041 Sulfite oxidase and related enzymes Length = 198 Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 2/168 (1%) Query: 245 PVGGGAEGSFRVYTVTDIPAFDNSNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHCV 304 P G F V T + + I GL + T+ W + + L + D HCV Sbjct: 18 PPGQTLTTRFPVLTYGPAQHYAPQDVQLRISGLAGAR-TFGWADLLALPQTTLTYDIHCV 76 Query: 305 TGWSVYKNTWEGLPLAKLLDMAGVSEQAAMVKFYSGDGVYTDSLTLAQAQMEDVMVAVMH 364 T WS TW G+ + LL + V +A V S G YT +L+L + ++A Sbjct: 77 THWSKLDTTWTGVRVTDLLAVLDVDPRATHVMQRSVGG-YTTNLSLEDFARPENLLAHTF 135 Query: 365 DGKPIPNQLGGPVRLVTPQMYAYKSVKWLNRIELIDEDHVGYWEQRGY 412 DG+P+ + GGP+RLV P +Y +KS KWL +E + D G+WE+ GY Sbjct: 136 DGQPLAAEHGGPLRLVVPHLYFWKSAKWLTELEFMAADAPGFWEKNGY 183 >mlr0879 [R] COG2041 Sulfite oxidase and related enzymes Length = 280 Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 16/161 (9%) Query: 268 SNWSFTIDGLVDQKFTWNWEEFVKLQREVQVSDFHCVTGWSVYKNTWEGLPLAKLLDMAG 327 ++W + GLV++ + + E+ + Q++ CV GWS W G PL+ +LD A Sbjct: 116 ADWRLEVSGLVEKPLSLSREQLQNMPSRTQITRHDCVEGWSCIAK-WTGTPLSLVLDQAV 174 Query: 328 VSEQAAMVKFY---------SGDGVYTDSLTLAQAQMEDVMVAVMHDGKPIPNQLGGPVR 378 V QA V F+ SGD Y ++ L A+ ++A +GKP+P + G P+R Sbjct: 175 VKPQARYVMFHCLDTIDRSLSGDIKYYGTIDLIDARHPQTILAYGLNGKPLPVENGAPLR 234 Query: 379 LVTPQMYAYKSVKWLNRIELID------EDHVGYWEQRGYD 413 + + YK K+L +IEL+D GYWE GYD Sbjct: 235 VRVERQLGYKMPKYLYKIELVDGFANVGGGRGGYWEDNGYD 275 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,364,177 Number of extensions: 1103253 Number of successful extensions: 1923 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 1890 Number of HSP's successfully gapped: 22 Length of query: 424 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 315 Effective length of database: 25,807,025 Effective search space: 8129212875 Effective search space used: 8129212875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 117 (49.7 bits)