BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0568.0003.p (235 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 279 2e-75 BH1153 [TK] COG0745 Response regulators consisting of a CheY-lik... 235 3e-62 lin2516 [TK] COG0745 Response regulators consisting of a CheY-li... 199 3e-51 BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik... 196 2e-50 SA0017 [TK] COG0745 Response regulators consisting of a CheY-lik... 193 1e-49 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 128/233 (54%), Positives = 176/233 (75%), Gaps = 2/233 (0%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M+ T+L+VDDEKEI +L+ IY NEG+ ++KA +G+EAL+ L++ V L+++D+MMP+M Sbjct: 1 MESRTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKM 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 DGI CM+IRE++N PIIMLSAK DMDKILGL+ GADDY+ KPFNPLEL+AR KSQ+RR Sbjct: 61 DGITTCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRR 120 Query: 121 YHRFNKEAPVKPNENELVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQVLS 180 Y + N + + N + ++ ++ HEV + R V LT REF IL LL+R++G V S Sbjct: 121 YTKLN--STYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFS 178 Query: 181 MEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLDR 233 E+IY +VW + F D NTVMVHIR IREKIE +P++P YI+TVWG+GYK+++ Sbjct: 179 TEKIYESVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEK 231 >BH1153 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 118/230 (51%), Positives = 158/230 (68%), Gaps = 4/230 (1%) Query: 5 TILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRMDGIA 64 +L+VDD+KEI + IY +NEG + +A DG+EAL+ L EE + L+++DVMMPR+DGI Sbjct: 6 NVLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQ 65 Query: 65 ACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRRYHRF 124 ++IRE +N+PII LSAK+ + DK+LGL +G DDYV KPFNPLEL+AR KSQLRRY Sbjct: 66 TTLKIREARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125 Query: 125 NKEAPVKPNENELVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQVLSMEQI 184 K N + +D+ EV VKLTP E+ I+ELL + G+V S+ +I Sbjct: 126 GTYEQKKQLIN---LNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEI 182 Query: 185 YTNVWSDP-FLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLDR 233 Y VW++P F NTV VHIR IREKIE+DP PR+++ VWGIGYK++R Sbjct: 183 YERVWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKMER 232 >lin2516 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 231 Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 150/229 (65%), Gaps = 3/229 (1%) Query: 5 TILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRMDGIA 64 +IL+ DD+KEIV+L+ +Y +NEGY + +AYDG E ++E+ L+I+D+MMP M+G+ Sbjct: 4 SILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLE 63 Query: 65 ACMEIREEQNM-PIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRRYHR 123 C +R + PI+MLSAK D DKI+GL GADDY+ KPFNPLEL R K+ LRR + Sbjct: 64 VCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQ 123 Query: 124 FNKEAPVKPNENELVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQVLSMEQ 183 ++ PV ++++++ +VVD H V+V +++ LT EF IL LLA G+V S E Sbjct: 124 MSQAEPV--SQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEY 181 Query: 184 IYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKLD 232 I+ +W + L TVMVHI N+R+K+ I+T+WG+GYK++ Sbjct: 182 IFEKIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 149/231 (64%), Gaps = 1/231 (0%) Query: 1 MKQETILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRM 60 M + ILL++D+ I ++ + + EGY + A+DG EA + T DL+++D+M+PR Sbjct: 1 MIEHKILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRR 60 Query: 61 DGIAACMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRR 120 +GI IR + +P++++SAK+SD+DK LGL GADDY+ KPF+ +EL AR K+ +RR Sbjct: 61 NGIDCLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRR 120 Query: 121 YHRFNKEAPVKPNENELVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQVLS 180 + + + NE + +LVV+++ V ++KLT +EF IL+L H +V + Sbjct: 121 TVNYAQASQSAENER-IKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFT 179 Query: 181 MEQIYTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKL 231 EQ+Y +VW+D + N + VHIR +REKIE P +P+YI+T+WGIGY++ Sbjct: 180 KEQLYRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRM 230 >SA0017 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 235 Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 148/227 (65%), Gaps = 3/227 (1%) Query: 6 ILLVDDEKEIVNLLDIYFRNEGYRLLKAYDGMEALDYLREETVDLIIMDVMMPRMDGIAA 65 +++VDDEK I ++L+ + EGY + AYDG +A+D + EE D++++D+M+P DG+ Sbjct: 7 VVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEV 66 Query: 66 CMEIREEQNMPIIMLSAKNSDMDKILGLSIGADDYVGKPFNPLELVARAKSQLRRYHRFN 125 C E+R++ MPIIML+AK+S++DK+LGL +GADDYV KPF+ EL+AR K+ LRR+ ++ Sbjct: 67 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH--YS 124 Query: 126 KEAPVKPN-ENELVFEDLVVDIAKHEVSVDSRKVKLTPREFSILELLARHQGQVLSMEQI 184 + A N NE+ +D+V+ + + ++LT REF + L++H GQV++ E + Sbjct: 125 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 184 Query: 185 YTNVWSDPFLDGGNTVMVHIRNIREKIELDPKRPRYIQTVWGIGYKL 231 VW + TV V IR +REKIE DP P YI T G+GY L Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 231 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,855,624 Number of extensions: 731149 Number of successful extensions: 4172 Number of sequences better than 1.0e-05: 484 Number of HSP's gapped: 3717 Number of HSP's successfully gapped: 484 Length of query: 235 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 132 Effective length of database: 26,499,029 Effective search space: 3497871828 Effective search space used: 3497871828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)