BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0052.p
         (774 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAP0002_2 [D] COG5279 Uncharacterized protein involved in cytoki...    58   7e-08

>CAP0002_2 [D] COG5279 Uncharacterized protein involved in cytokinesis,
           contains TGc (transglutaminase/protease-like) domain
          Length = 252

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 4/113 (3%), Positives = 21/113 (18%), Gaps = 12/113 (10%)

Query: 540 IAAAIKDGMSADEKQMAIYNYLNDNTTYDDAALENAKQQQFKSVDAKFNDSFSTYGILVK 599
           ++            + +                    +      D       ++  +L +
Sbjct: 1   MSDWNPSLYLHFSAERSRPAVELLARVPL--------ENVEYVADLGCG-PGNSTALLQQ 51

Query: 600 KVGVCMSYAHTFQLLSDLVQVPSMVVTGTMDGVNHAWNKVKI-GGEWVNVDAT 651
           +                     ++             N   +   + +  +A+
Sbjct: 52  RWPAARITGIDSSPAMIAEARSALPDCQF--VEADIRNWQPVQALDLIFANAS 102


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.311    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 56,239,070
Number of extensions: 2436344
Number of successful extensions: 4705
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4711
Number of HSP's successfully gapped: 2
Length of query: 774
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 660
Effective length of database: 25,230,355
Effective search space: 16652034300
Effective search space used: 16652034300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)