BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0050.p (337 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value FN1094 [M] COG0463 Glycosyltransferases involved in cell wall bi... 193 3e-49 PH1596 [M] COG0463 Glycosyltransferases involved in cell wall bi... 99 1e-20 MTH377 [M] COG0463 Glycosyltransferases involved in cell wall bi... 86 6e-17 MTH1365 [C] COG1146 Ferredoxin 82 2e-15 MTH1363 [H] COG1429 Cobalamin biosynthesis protein CobN and rela... 82 2e-15 >FN1094 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 360 Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 1 MTILIPAYEPDERLLDLIEQLCDYQLGPIVLVDDGSGPAYQGIFNIAAAF---GCTVLTH 57 + ILIPA P ++L+D ++ L + L I+LVDDGS ++ IF+I F V H Sbjct: 4 ILILIPALNPPKQLIDYVKSLLENGLNDILLVDDGSKEEFKEIFDIIEKFPEGNIKVFRH 63 Query: 58 PVNFGKGLALKTGLRY-IREAGLPGY--VVCADSDGQHLPHDIKRIAGVLQNQTTPGIVL 114 N GKG ALK Y + L Y VV ADSDGQH D+ ++A ++ + ++L Sbjct: 64 AKNLGKGRALKNAFNYFLTLPNLAEYSGVVTADSDGQHRVEDVIKVAKEVE-ENPNKLIL 122 Query: 115 GSRRFS-GTVPLRSRFGNSVTRVVFSLTTGTKIYDTQTGLRGFSPQMLDWLCQIPGERFE 173 G R F VP +SRFGN +T F L G I DTQTGLRGF ++ I GERFE Sbjct: 123 GCRDFDLEQVPPKSRFGNKITNGAFKLFYGKNISDTQTGLRGFPTAIIKDFLDIAGERFE 182 Query: 174 YEMNMLLTAHREGYTVTEEFIDTVYLEDNQSSHFRPLADSFRIYL----PLLMF---STS 226 YE ML+ ++ + E I+T+Y DN +HF P+ DS +IY P L + +TS Sbjct: 183 YETKMLIYCFQKEIEIKEVVIETIYFNDNSETHFNPILDSIKIYKVTLSPFLKYIASATS 242 Query: 227 SLVSALLDFTLLFLFQRLTHN------LFLSVAAARLCSSIFNYSMNRRYVFTGGKMSKL 280 S + +L F + N + +S AR+ SS FN+ +N+++VF K +K Sbjct: 243 SFILDILSFKWILAILIALGNIEGAGIITISTIVARIISSSFNFYLNKKFVFKYEKNTK- 301 Query: 281 QQSLPKYFAXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXTEASIFLFSYWAQRRFVY 337 +SL KY++ + ++ +FL SY+ Q+R+V+ Sbjct: 302 -KSLLKYYSLCTVQMLLSATLVTVVWKHTRYAETSIKIVVDSILFLLSYFIQQRWVF 357 >PH1596 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 215 Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 16/224 (7%) Query: 1 MTILIPAYEPDERLLDLIEQLCDYQLGPIVLVDDGSGPAYQGIFNIAAAFGCTVLTHPVN 60 ++++IPAY + R+ ++++ + D+ + +++VDDGS G +A G TV+ N Sbjct: 7 ISVIIPAYNEERRIGNVLKGIPDF-VDEVIVVDDGSS---DGTSKVAMELGATVIRLNKN 62 Query: 61 FGKGLALKTGLRYIREAGLPGYVVCADSDGQHLPHDIKRIAGVLQNQTTPGIVLGSRRFS 120 GKG A++ GL+ +V D+DGQH P +I R+ + + +V+G R + Sbjct: 63 SGKGAAMREGLKI----STGDIIVFMDADGQHNPKEIYRLVKPIV-EGRADLVIGRRIIT 117 Query: 121 -GTVPLRSRFGNSVTRVVFSLTTGTKIYDTQTGLRGFSPQMLDWLCQIPGERFEYEMNML 179 G P+ + N +T + +L T KI DTQ+G R + ++ I +R+E E +L Sbjct: 118 RGKRPMSRKISNFITTRLITLKTRKKILDTQSGFRAIRRE---FVPVIESDRYEVETEVL 174 Query: 180 LTAHREGYTVTEEFIDTVYLEDNQSSHFRPLADSFRIYLPLLMF 223 + A ++G + E I T Y D ++ HF+ + D FR L+ + Sbjct: 175 IKAIKKGARILEVPISTRY--DVETGHFK-MIDIFRFLFALIKY 215 >MTH377 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 254 Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 11/208 (5%), Positives = 29/208 (13%), Gaps = 16/208 (7%) Query: 1 MTILIPAYEPDERLLDLIEQLCDYQLGPIVLVDDGSGPAYQGIFNIAAAFGCTVLTHPVN 60 Q P+ + G + Sbjct: 25 EFRPDVIKRAVLSAQTARVQPWGP--DPMAGKRTSAQSYGAGRGVAM---VPRIKNGSRA 79 Query: 61 FGKGLALKTGLRYIREA--GLPGYVVCADSDGQHLPHDIKRIAGVLQNQTTPGIVLGSR- 117 A+ Y + + L A ++ G R Sbjct: 80 AFVPQAVGGR---RAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLV---EARGHRI 133 Query: 118 --RFSGTVPLRSRFGNSVTRVVFSLTTGTKIYDTQTGLRGFSPQMLDWLCQIPGERFEYE 175 + + ++ ++ G ++ Sbjct: 134 ENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIRAGKGKMRGRKYRTP 193 Query: 176 MNMLLTAHREGYTVTEEFIDTVYLEDNQ 203 L+ + Sbjct: 194 RGPLIVVGDDKGITRGARNHPGVDVVRV 221 >MTH1365 [C] COG1146 Ferredoxin Length = 268 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 11/213 (5%), Positives = 34/213 (15%), Gaps = 11/213 (5%) Query: 1 MTILIPAYEPDERLLDLIEQLCDYQLGPIVLVDDGSGPAYQGIFNIAAAF--GCTVLTHP 58 ++ + + ++ + V G + Sbjct: 12 DSLTAETGDLKIKTYKVVLIARAASI-FGVKRIVIYHDDADGEARFIRDILTYMDTPQYL 70 Query: 59 VNFGKGLALKTGLRYIREAGLPGYVVCADSDGQHLPHDIKRIAGVLQN--QTTPGIVLGS 116 + + I V + T I Sbjct: 71 RRKVFPIMRELKHVGILPPL-RTPHHPTGKPVTGEYRQGL---TVKRVKKGTLVDIGADK 126 Query: 117 RRFSGTVPLRSRFGNSVTRVVFSLTTGTKIYDTQTGLRGFSPQMLDWLCQIPGERFEYEM 176 L S V + + + G+ + Sbjct: 127 LALC-REKLTVNRIMSFRVVRLGKEILIEPDEPEDRYWGYEVLDTR-RNLAESLKTVGAD 184 Query: 177 NMLLTAHREGYTVTEEFIDTVYLEDNQSSHFRP 209 ++ T+ + + + + Sbjct: 185 VVVATSRNASPITSILDEVKTRMRGAREAAILF 217 >MTH1363 [H] COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases Length = 346 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 12/213 (5%), Positives = 29/213 (13%), Gaps = 11/213 (5%) Query: 1 MTILIPAYEPDERLLDLIEQLCDYQLGPIVLVDDGSGPAYQGIFNIAAAF--GCTVLTHP 58 + + V + G T Sbjct: 12 EVSTLGLGTMTFGEQNSEADAHAQLD-YAVAQGINLIDVAEMYPVPPRPETQGLTETYVG 70 Query: 59 VNFGKGLALKTGLRYIREAGLPGYVVCADSDGQHLPHDIKRIAGVLQN--QTTPGIVLGS 116 K + + + + +G P Sbjct: 71 NWLAKHGSREKLIIASKVSG-PSRNNDKGIRPDQALDRKN---IREALHDSLKRLQTDYL 126 Query: 117 RRFSGTVPLRSRFGNSVTRVVFSLTTGTKIYDTQTGLRGFSPQMLDWLCQIPGERFEYEM 176 + + + + T Q + G E Sbjct: 127 DLYQ-VHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAG-KIRYIGVSNETAF 184 Query: 177 NMLLTAHREGYTVTEEFIDTVYLEDNQSSHFRP 209 ++ H + + F Sbjct: 185 GVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEV 217 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,399,403 Number of extensions: 914307 Number of successful extensions: 2962 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 2919 Number of HSP's successfully gapped: 33 Length of query: 337 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 230 Effective length of database: 26,037,693 Effective search space: 5988669390 Effective search space used: 5988669390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)