BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0048.p (238 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik... 316 3e-86 BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-li... 298 4e-81 SPy0528 [TK] COG0745 Response regulators consisting of a CheY-li... 201 7e-52 SP1227 [TK] COG0745 Response regulators consisting of a CheY-lik... 201 8e-52 SA0017 [TK] COG0745 Response regulators consisting of a CheY-lik... 197 2e-50 >BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 316 bits (809), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 156/236 (66%), Positives = 182/236 (77%), Gaps = 10/236 (4%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 +LLIEDD +ISEMV+ +L EGY V AFDG+ A RLF YDLVLLDLMLP+R+G D Sbjct: 6 ILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQN-TYDLVLLDLMLPRRNGID 64 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRA-GY 119 LQ IR S+VPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIEL ARVKAAIRR Y Sbjct: 65 CLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVNY 124 Query: 120 AAVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGR 179 A S + I + L V+L +F+V K GEE+KLTAKEFQIL +F + P + Sbjct: 125 AQASQSAENER--------IKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKK 176 Query: 180 VYTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKLGD 235 V+TK Q+Y+SVW DDYY DENVINVH+RRLREKIED PSKP+YIKT+WGIGY++G+ Sbjct: 177 VFTKEQLYRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232 >BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 215 Score = 298 bits (764), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 0/234 (0%), Positives = 0/234 (0%), Gaps = 9/234 (3%) Query: 2 LLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSDV 61 + + L+ A + D L LM + + Sbjct: 1 MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQ-EVDDSGLTLMQILLTHGHL 59 Query: 62 LQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYAA 121 L + + + L + + Sbjct: 60 DHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEECQPLTPDRWLNEGD---- 115 Query: 122 VGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGRVY 181 S G Q + K + K F Sbjct: 116 TISIGNV--TLQVL--HCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGRSDFPRGDHNQL 171 Query: 182 TKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKLGD 235 Sbjct: 172 225 >SPy0528 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 236 Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 155/231 (67%), Gaps = 4/231 (1%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 +L+++D++ IS++++ L KEGY++ TAFDG A +F DL++LDLMLP+ G + Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKP-DLIILDLMLPELDGLE 62 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYA 120 V + IR+ S VP++++SAKDS+ DK +GL GADDY+TKPFS EL ARVKA +RR Sbjct: 63 VAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETI 122 Query: 121 AVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGRV 180 + + A+ ++ I +L+ L D F K+G+EV+LT +EF++L A+ G+V Sbjct: 123 ETAVAEENASSGTQELTIGNLQILP---DAFVAKKHGQEVELTHREFELLHHLANHMGQV 179 Query: 181 YTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGY 231 T+ + + VW DY+GD ++V +RRLREKIED PS+PEYI T G+GY Sbjct: 180 MTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGY 230 >SP1227 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 109/231 (47%), Positives = 154/231 (66%), Gaps = 6/231 (2%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 +L+++D++ IS++++ + KEGYEV TAF+G A F D+++LDLMLP+ G + Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLE 62 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYA 120 V +TIR+ S VP+L++SAKDS+ DK +GL GADDY+TKPFS EL ARVKA +RR+ Sbjct: 63 VAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPM 122 Query: 121 AVGSSGQEAAPAQEKANIISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSPGRV 180 V GQE A K I + L + D + K GEE+ LT +EF++L AS G+V Sbjct: 123 PV--DGQE---ADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQV 177 Query: 181 YTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGY 231 T+ + ++VW DY+GD ++V +RRLREKIED PS+PEYI T G+GY Sbjct: 178 ITREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGY 228 >SA0017 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 235 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 157/236 (66%), Gaps = 14/236 (5%) Query: 1 VLLIEDDEAISEMVRSYLVKEGYEVETAFDGDAAERLFHHGGAYDLVLLDLMLPKRSGSD 60 V++++D++ I++++ L KEGY+V A+DG+ A L + D+VLLD+MLP R G + Sbjct: 7 VVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEP-DIVLLDIMLPGRDGME 65 Query: 61 VLQTIRRDSLVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELAARVKAAIRRAGYA 120 V + +R+ +P+++++AKDS++DK LGL GADDY+TKPFS EL ARVKA +RR Sbjct: 66 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR---- 121 Query: 121 AVGSSGQEAAPAQEKANI---ISLRGLTVDLDNFSVLKNGEEVKLTAKEFQILGMFASSP 177 + PAQ+ N+ I+++ + + D +S+ K GE+++LT +EF++ + Sbjct: 122 ------HYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHM 175 Query: 178 GRVYTKAQIYKSVWEDDYYGDENVINVHMRRLREKIEDDPSKPEYIKTLWGIGYKL 233 G+V T+ + ++VW DY+GD ++V +RRLREKIEDDPS PEYI T G+GY L Sbjct: 176 GQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 231 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,328,410 Number of extensions: 720083 Number of successful extensions: 3157 Number of sequences better than 1.0e-05: 360 Number of HSP's gapped: 2675 Number of HSP's successfully gapped: 360 Length of query: 238 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 135 Effective length of database: 26,499,029 Effective search space: 3577368915 Effective search space used: 3577368915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)