BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0044.p
         (87 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0818 [V] COG1131 ABC-type multidrug transport system, ATPase c...    84   6e-17
BS_ycbN [V] COG1131 ABC-type multidrug transport system, ATPase ...    66   1e-11

>BH0818 [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 314

 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 63/81 (77%), Gaps = 1/81 (1%)

Query: 2   IRSQNTQYIELITGESSKAVYVLEHKLGLTNFKMLNPRTIRIYD-AVQQLELNKALTEAD 60
           IRSQ T+YIEL+T ++ KA+YVL+++LGL N K+++   IRIYD  + Q +L+K L   D
Sbjct: 220 IRSQQTEYIELLTYDARKALYVLDNELGLKNVKLMDQSLIRIYDHHLTQNQLSKTLISND 279

Query: 61  VELESLSKKNHSLEDHFVELM 81
           V +E++++KNHSLED+F+ L+
Sbjct: 280 VNIEAIARKNHSLEDYFMNLI 300


>BS_ycbN [V] COG1131 ABC-type multidrug transport system, ATPase component
          Length = 381

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 4/62 (6%), Positives = 16/62 (25%), Gaps = 1/62 (1%)

Query: 2   IRSQNTQYIELITGESSKAVYVLEHKLGLTNFKMLNPRTIRIYDA-VQQLELNKALTEAD 60
                 + IE +  +++     +   + L                 +     ++ + +A 
Sbjct: 200 PPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQ 259

Query: 61  VE 62
             
Sbjct: 260 AA 261


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,628,943
Number of extensions: 179669
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 38,378,431
Length adjustment: 57
Effective length of query: 30
Effective length of database: 31,804,393
Effective search space: 954131790
Effective search space used: 954131790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)