BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0042.p (203 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1917 [G] COG0726 Predicted xylanase/chitin deacetylase 124 7e-29 all4345 [G] COG0726 Predicted xylanase/chitin deacetylase 115 4e-26 alr1669 [G] COG0726 Predicted xylanase/chitin deacetylase 106 2e-23 mlr6175 [G] COG0726 Predicted xylanase/chitin deacetylase 106 3e-23 DR1077_1 [G] COG0726 Predicted xylanase/chitin deacetylase 105 6e-23 >BH1917 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 276 Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 115/198 (58%), Gaps = 5/198 (2%) Query: 5 TSPKEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQIG 64 T+ +A TFDDGP P +TP++LD+L ++ V ATFFV+G +AER+P+L+ RM EGH IG Sbjct: 77 TTANRIALTFDDGPDPRFTPQVLDVLQEYNVPATFFVMGRRAERFPDLVTRMAAEGHVIG 136 Query: 65 IHNYIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRLKQY 124 H+Y H + + + + +T I+++++G RP ++R P + + Sbjct: 137 NHSYSHPNFVVEDDVALLEQEVLQTEAIIQNLVGYRPRFFRAPYGFLYNELVEKLAELNN 196 Query: 125 RIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQALEE 184 +V WS+ DW R++ + ++++ + GSI+++HD + ADG+ ++AL + Sbjct: 197 TVVAWSIDTLDW-RERPAEEVAFSVISSAQPGSIVLMHDGAE---ADGDRTQ-TIEALRQ 251 Query: 185 VLNQLKTRNLKCVRVDEM 202 ++ L+ + + V V E+ Sbjct: 252 IIPTLQEQGFEFVTVSEL 269 >all4345 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 305 Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 14/197 (7%) Query: 8 KEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQIGIHN 67 K +A TFDDGP PE T ++LD+L Q+ +KATFFV+G + YP+L++R+ EGH IG H Sbjct: 106 KVIALTFDDGPWPESTTQVLDILKQNNIKATFFVVGQNVKNYPDLLRRVAAEGHAIGNHT 165 Query: 68 YIHTSNW--LMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRLKQYR 125 + H W M P + + T +++ I G + D +RPP + + R +Y Sbjct: 166 WHH---WYHFMNP-QVAAYEVNNTTNLIYQITGVKTDLFRPPGGMMNNGLVSYARNNKYA 221 Query: 126 IVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQALEEV 185 +++WS + D+SR L + + + G I+++HD G GN +QAL E+ Sbjct: 222 VIMWSSDSIDYSRPSV-PRLINNVFRLAKPGGIVLMHDGG------GNRTQ-TVQALPEI 273 Query: 186 LNQLKTRNLKCVRVDEM 202 + + + + V V E+ Sbjct: 274 IARFRKQGYSFVTVPEL 290 >alr1669 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 359 Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 10/198 (5%), Positives = 28/198 (14%), Gaps = 12/198 (6%) Query: 8 KEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQIGIHN 67 + T D +++ + + L++ I Sbjct: 33 VKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISA 92 Query: 68 YIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDY---YRPPXXXXLINMFDFFRLKQY 124 + + V + P Sbjct: 93 QHFHTAVHNEEQLAALE-EASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVR 151 Query: 125 RIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQALEE 184 + V KC + L + Sbjct: 152 QPVNIVSHFARADEPKC-GATEKQLAIFNTFCEGKPGQR-SIAASGGILL------WPQS 203 Query: 185 VLNQLKTRNLKCVRVDEM 202 + ++ + Sbjct: 204 HFDWVRPGIILYGVSPLE 221 >mlr6175 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 219 Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 4 GTSPKEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQI 63 GT + V TFDDGP+P +TP++LD+LAQ++V ATFFV+G+ A +PELI+RM EGH++ Sbjct: 17 GTGRRSVYLTFDDGPNPCFTPQILDVLAQNRVPATFFVIGAYAAEHPELIQRMIAEGHEV 76 Query: 64 GIHNYIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRLKQ 123 G H H G ++R + I+ + Y R P +F + Sbjct: 77 GNHTMSHPDLSKCGLGEVQREVFEANQAIMLACPQASIRYIRAPYGAWSEEVFTASEIAG 136 Query: 124 YRIVLWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHD 163 + WS+ DWSR ++ +L +R G+I++LHD Sbjct: 137 LAALHWSIDPRDWSRPG-TDAIVDAVLASVRPGAIVLLHD 175 >DR1077_1 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 225 Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 8/195 (4%) Query: 8 KEVAFTFDDGPHPEYTPRLLDLLAQHKVKATFFVLGSQAERYPELIKRMDREGHQIGIHN 67 +EVA TFDDGP P+ TP +L L + + ATFFV+ +A+ +P+LI++M EGH++ H Sbjct: 39 REVALTFDDGPDPQTTPAVLAALREADMHATFFVIAGKAQAHPDLIRQMLEEGHEVEAHA 98 Query: 68 YIHTSNWLMLPGTIRRGHLKRTADIVESIIGTRPDYYRPPXXXXLINMFDFFRLKQYRIV 127 H W+ P L R V ++ G ++RPP ++ + RL R Sbjct: 99 DKHVHAWIRTPWGAALDPL-RAVRAVGAMTGRPVRFHRPPHGAYTLSTWLGQRLAGVRGA 157 Query: 128 LWSLMAHDWSRKKCQTSLRSTLLNRIRDGSIIVLHDSGDTLGADGNAPHYMLQALEEVLN 187 WS+ DW + ++R L + G++IVLHD+G GA P L +L Sbjct: 158 HWSIEGCDWHPESIPDTVRERLAALLVPGAVIVLHDAGP--GARVTVP-----LLPSLLA 210 Query: 188 QLKTRNLKCVRVDEM 202 LK R + V + E+ Sbjct: 211 DLKARGYRSVTLAEL 225 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,820,618 Number of extensions: 623523 Number of successful extensions: 2261 Number of sequences better than 1.0e-05: 38 Number of HSP's gapped: 2236 Number of HSP's successfully gapped: 38 Length of query: 203 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 102 Effective length of database: 26,729,697 Effective search space: 2726429094 Effective search space used: 2726429094 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 113 (48.1 bits)