BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0038.p (262 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0416 [K] COG2207 AraC-type DNA-binding domain-containing proteins 100 2e-21 AGc4079 [V] COG1132 ABC-type multidrug transport system, ATPase ... 99 7e-21 AGc407 [K] COG2207 AraC-type DNA-binding domain-containing proteins 99 7e-21 AGc4077 [V] COG1132 ABC-type multidrug transport system, ATPase ... 99 7e-21 VC0192 [K] COG2207 AraC-type DNA-binding domain-containing proteins 97 4e-20 >PA0416 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 264 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 9/244 (3%) Query: 21 SASFTDFTYKKHCHEEYAVGVTLRGIQQYNLEG-SFQASHKNGVMLFNREQYHDGSSYDR 79 SAS ++KH H+E+ + L G++ L+G +FQA + + L+N Q G D Sbjct: 17 SASLAGHRFEKHSHDEFVISANLCGLEDVWLDGRTFQADSGD-LTLYNPGQIQGGGVRDG 75 Query: 80 EGIDYVMLYIKPDLFAEILGGQELRFTSPIVYDA----DLASCILSLNQSIRNGTDEAWS 135 + + LY+ A L + F P++ +LA+ I +L S R + Sbjct: 76 QPWRFASLYLPAAELASSLDLSSVEFDRPLLRSPALGRELAASIEALLASDRFARERG-E 134 Query: 136 SELLFRLGGLLSETEIAAPRRKN--NAFVQKAKEMMNSHIDQVLKLDDLCQEFGLSKYQF 193 LL LG LL+ + P+R + V + + ++ + + LD + ++ GLSKY Sbjct: 135 ERLLEFLGRLLAASGTRLPQRADPGRPAVARLQALLAERLAEPPDLDGMAEQVGLSKYHL 194 Query: 194 IREFKSHAGISPYQFFLNCKVERAKQAIERSRDIYAAVADYGFADLTHLNRHFKSMFGIT 253 +R FK G+SP Q+ + + RA + R + GFAD +HL R+F S +GI+ Sbjct: 195 LRAFKKATGLSPRQWSMQLRTRRALGLLRRGLAVGEVAHALGFADQSHLTRYFTSAYGIS 254 Query: 254 AYEY 257 Y Sbjct: 255 PGRY 258 >AGc4079 [V] COG1132 ABC-type multidrug transport system, ATPase and permease components Length = 258 Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 7/254 (2%) Query: 14 SADILSLSASFTDFTYKKHCHEEYAVGVTLRGIQQYNLEGSFQASHKNGVMLFNREQYHD 73 S I + A F Y H H+ YA+GVTL G+Q ++ G+ S V++ + ++ HD Sbjct: 6 SEGIERIDARFHGNAYAPHRHDTYALGVTLSGVQTFSYRGTSHFSMPGNVIVLHPDEIHD 65 Query: 74 GSSYDREGIDYVMLYIKPDLFAEILGGQELRFT-SPIVYDADLASCILSLNQSIRNGTDE 132 G + EG+ Y MLY+ P+ E G L F S ++ D + C+ ++ D Sbjct: 66 GGAGTDEGLHYRMLYLPPEKTTEA-GYNTLPFARSAVIEDEEFRQCLTEALGNLDGEPDS 124 Query: 133 AWSSELLFRLGGLLSETEIAAPRR---KNNAFVQKAKE-MMNSHIDQVLKLDDLCQEFGL 188 ++ RL LL + + R + A V ++ ++ + D V+ +L Q GL Sbjct: 125 LLLTDWQSRLSDLLWKHSNGSARSIKWIDRAAVLLCRDYLLENSADTVVS-QELEQISGL 183 Query: 189 SKYQFIREFKSHAGISPYQFFLNCKVERAKQAIERSRDIYAAVADYGFADLTHLNRHFKS 248 ++ R F+ G SP+++ + ++++ K + + GFAD H RHFK+ Sbjct: 184 DRFTLFRHFRCVFGTSPHRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKN 243 Query: 249 MFGITAYEYMSQLS 262 FG+ ++S +S Sbjct: 244 AFGMPPGRWLSLVS 257 >AGc407 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 258 Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 7/254 (2%) Query: 14 SADILSLSASFTDFTYKKHCHEEYAVGVTLRGIQQYNLEGSFQASHKNGVMLFNREQYHD 73 S I + A F Y H H+ YA+GVTL G+Q ++ G+ S V++ + ++ HD Sbjct: 6 SEGIERIDARFHGNAYAPHRHDTYALGVTLSGVQTFSYRGTSHFSMPGNVIVLHPDEIHD 65 Query: 74 GSSYDREGIDYVMLYIKPDLFAEILGGQELRFT-SPIVYDADLASCILSLNQSIRNGTDE 132 G + EG+ Y MLY+ P+ E G L F S ++ D + C+ ++ D Sbjct: 66 GGAGTDEGLHYRMLYLPPEKTTEA-GYNTLPFARSAVIEDEEFRQCLTEALGNLDGEPDS 124 Query: 133 AWSSELLFRLGGLLSETEIAAPRR---KNNAFVQKAKE-MMNSHIDQVLKLDDLCQEFGL 188 ++ RL LL + + R + A V ++ ++ + D V+ +L Q GL Sbjct: 125 LLLTDWQSRLSDLLWKHSNGSARSIKWIDRAAVLLCRDYLLENSADTVVS-QELEQISGL 183 Query: 189 SKYQFIREFKSHAGISPYQFFLNCKVERAKQAIERSRDIYAAVADYGFADLTHLNRHFKS 248 ++ R F+ G SP+++ + ++++ K + + GFAD H RHFK+ Sbjct: 184 DRFTLFRHFRCVFGTSPHRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKN 243 Query: 249 MFGITAYEYMSQLS 262 FG+ ++S +S Sbjct: 244 AFGMPPGRWLSLVS 257 >AGc4077 [V] COG1132 ABC-type multidrug transport system, ATPase and permease components Length = 258 Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 7/254 (2%) Query: 14 SADILSLSASFTDFTYKKHCHEEYAVGVTLRGIQQYNLEGSFQASHKNGVMLFNREQYHD 73 S I + A F Y H H+ YA+GVTL G+Q ++ G+ S V++ + ++ HD Sbjct: 6 SEGIERIDARFHGNAYAPHRHDTYALGVTLSGVQTFSYRGTSHFSMPGNVIVLHPDEIHD 65 Query: 74 GSSYDREGIDYVMLYIKPDLFAEILGGQELRFT-SPIVYDADLASCILSLNQSIRNGTDE 132 G + EG+ Y MLY+ P+ E G L F S ++ D + C+ ++ D Sbjct: 66 GGAGTDEGLHYRMLYLPPEKTTEA-GYNTLPFARSAVIEDEEFRQCLTEALGNLDGEPDS 124 Query: 133 AWSSELLFRLGGLLSETEIAAPRR---KNNAFVQKAKE-MMNSHIDQVLKLDDLCQEFGL 188 ++ RL LL + + R + A V ++ ++ + D V+ +L Q GL Sbjct: 125 LLLTDWQSRLSDLLWKHSNGSARSIKWIDRAAVLLCRDYLLENSADTVVS-QELEQISGL 183 Query: 189 SKYQFIREFKSHAGISPYQFFLNCKVERAKQAIERSRDIYAAVADYGFADLTHLNRHFKS 248 ++ R F+ G SP+++ + ++++ K + + GFAD H RHFK+ Sbjct: 184 DRFTLFRHFRCVFGTSPHRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKN 243 Query: 249 MFGITAYEYMSQLS 262 FG+ ++S +S Sbjct: 244 AFGMPPGRWLSLVS 257 >VC0192 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 270 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 17/264 (6%) Query: 5 SVEKFNYAKSA--DILSLSASFTDFTYKKHCHEEYAVGVTLRGIQQYNLEGSFQASHKNG 62 S++ NY SA I + A + F +++H H + +G+ +G+Q++ +G++ + G Sbjct: 3 SMDTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGG 62 Query: 63 VMLFNREQYHDGSSYDREGIDYVMLYIKPDLFAEILGGQELR----FTSPIVYDADLASC 118 V+L + ++ HDG ++ G + I+P+ + L ++ F IV D L Sbjct: 63 VVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLFHS 122 Query: 119 ILSLNQSIRNGTDEAWSSELLFRLG--------GLLSETEIAAPRRKNNAFVQKAKEMMN 170 + L+ +R + + L G L + + + N A + KE + Sbjct: 123 LQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQHNLALL---KEWVL 179 Query: 171 SHIDQVLKLDDLCQEFGLSKYQFIREFKSHAGISPYQFFLNCKVERAKQAIERSRDIYAA 230 S +DQ ++L+ L Q LS QF R FK+ G++PY + ++E+A + ++ + Sbjct: 180 SQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDV 239 Query: 231 VADYGFADLTHLNRHFKSMFGITA 254 GF D H ++ FK+ +G++ Sbjct: 240 AYQVGFYDQAHFSKAFKATYGLSP 263 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,458,437 Number of extensions: 788139 Number of successful extensions: 1987 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 1993 Number of HSP's successfully gapped: 24 Length of query: 262 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 158 Effective length of database: 26,383,695 Effective search space: 4168623810 Effective search space used: 4168623810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)