BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0036.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ydeE_2 [S] COG3708 Uncharacterized protein conserved in bacteria 249 3e-66 BH0594_1 [K] COG2207 AraC-type DNA-binding domain-containing pro... 189 6e-48 BS_ydeE_1 [K] COG2207 AraC-type DNA-binding domain-containing pr... 187 3e-47 BH0594_2 [S] COG3708 Uncharacterized protein conserved in bacteria 152 5e-37 CAC0426_1 [K] COG2207 AraC-type DNA-binding domain-containing pr... 114 2e-25 >BS_ydeE_2 [S] COG3708 Uncharacterized protein conserved in bacteria Length = 163 Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 112/160 (70%), Positives = 138/160 (86%) Query: 128 MNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTDPAGIISA 187 MNYRIEEK+AFRIVG+KKRVPI F G+NPEIA+M +SL+ + I +LK+LSN P+G+ISA Sbjct: 1 MNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLISA 60 Query: 188 SVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDTLQNIWGR 247 S NFSEGR EE GELDHYIG ATT P+ +++LEV ASTWAVFE++GPFPDTLQ +WGR Sbjct: 61 STNFSEGRTEENGELDHYIGAATTKRCPDNFSRLEVPASTWAVFESIGPFPDTLQEVWGR 120 Query: 248 IYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 IYSEWFPSS+YE +EGPE+LWNE +D SP+++SEIWIP+ Sbjct: 121 IYSEWFPSSNYEQIEGPEILWNEHKDVTSPSFKSEIWIPI 160 >BH0594_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 127 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 84/127 (66%), Positives = 107/127 (84%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M+ L+ MN A++YIE+HLT +ID++EV R A CSEYHFKRMFSF+AGV LSEYIRRRRLT Sbjct: 1 MDWLKRMNGAMAYIEEHLTGDIDYREVARIACCSEYHFKRMFSFIAGVTLSEYIRRRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL+ SQ+++IDVAV GY SPDAFT+AFQ HG+TP+EAR SLK++P MTF + Sbjct: 61 LAAFELKNSQMKVIDVAVKYGYHSPDAFTRAFQSVHGITPTEARNNGHSLKAYPAMTFHI 120 Query: 121 TIRGGSE 127 +I+GG+E Sbjct: 121 SIKGGTE 127 >BS_ydeE_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 127 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 81/127 (63%), Positives = 107/127 (84%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 M++L++MN AL YIE++LT +IDF+E + A CSEYHFKRMFSFLAG+ LSEYIRRRRLT Sbjct: 1 MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLT 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +AAFEL+ S +++ID+A+ GY+SPD+F +AFQ HG+ PS+AR SLK++PRMTFQL Sbjct: 61 LAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQL 120 Query: 121 TIRGGSE 127 TI+GG+E Sbjct: 121 TIKGGNE 127 >BH0594_2 [S] COG3708 Uncharacterized protein conserved in bacteria Length = 154 Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 9/160 (5%) Query: 128 MNYRIEEKKAFRIVGLKKRVPIQFSGVNPEIAAMAQSLNLQMITELKQLSNTDPAGIISA 187 MNYR+E+K+AFR+VG+KKRV + G N +I M +++ + +++ LS +P GI++ Sbjct: 1 MNYRMEQKEAFRVVGMKKRVKLVHRGTNTDITDMLGTISDETYMQIENLSTLEPGGILNV 60 Query: 188 SVNFSEGRMEEKGELDHYIGVATTLEGPEPYAQLEVAASTWAVFEAVGPFPDTLQNIWGR 247 NFSEG +E++GELD+YI AT + PE +LE+ TWAVF G + D +Q +WGR Sbjct: 61 CTNFSEG-LEDEGELDYYIAAATIKKCPEHLVELEIPTFTWAVFTVEGSWED-VQEMWGR 118 Query: 248 IYSEWFPSSSYELVEGPEMLWNESQDTASPTYRSEIWIPV 287 IYS+WFP+S YE EGPE+L +S +SEIWIPV Sbjct: 119 IYSDWFPTSDYEHAEGPEIL-------SSANEKSEIWIPV 151 >CAC0426_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 127 Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 85/124 (68%) Query: 1 MNVLENMNDALSYIEDHLTEEIDFKEVTRRALCSEYHFKRMFSFLAGVPLSEYIRRRRLT 60 MN + +MN+AL Y+E++L I+ EV A S+++F R+F L G+ L +YIR R+L+ Sbjct: 1 MNWIGDMNNALRYVEENLERNIESGEVANAAHMSKFYFLRIFKILTGMTLGDYIRERKLS 60 Query: 61 IAAFELQQSQLRIIDVAVHVGYSSPDAFTKAFQLFHGVTPSEARAGSPSLKSFPRMTFQL 120 +A ++ + +IID++ GY +P+AFTKAF+ +G++P+EAR +LK+ P ++FQ+ Sbjct: 61 LATKDIVSTNQKIIDISYKYGYETPEAFTKAFKRLNGISPTEARKSKNNLKAIPPLSFQV 120 Query: 121 TIRG 124 ++G Sbjct: 121 IVKG 124 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,439,757 Number of extensions: 895675 Number of successful extensions: 3008 Number of sequences better than 1.0e-05: 764 Number of HSP's gapped: 3014 Number of HSP's successfully gapped: 764 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)