BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0024.p
         (229 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0647 [M] COG1368 Phosphoglycerol transferase and related prot...   157   1e-38
STM1703_3 [T] COG2200 FOG: EAL domain                                 140   2e-33
STM1703_1 [T] COG2202 FOG: PAS/PAC domain                             140   2e-33
STM1703_2 [T] COG2199 FOG: GGDEF domain                               140   2e-33
BS_yqgS [M] COG1368 Phosphoglycerol transferase and related prot...   100   2e-21

>lin0647 [M] COG1368 Phosphoglycerol transferase and related proteins,
           alkaline phosphatase superfamily
          Length = 346

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 0/223 (0%), Positives = 0/223 (0%), Gaps = 1/223 (0%)

Query: 1   VISMSSHNPFTIPEDKYKMALPERFEGTLVGNYIRAQNYADYALGQFIDELKQNGVWDNS 60
                                                                       
Sbjct: 382                                                              441

Query: 61  LIMLYGDHRGLPIFSLKEEDHVLLEEILNHKYTERDLINIPLIIASPGLTTPSVKEQLGG 120
                                                                       
Sbjct: 442                                                              501

Query: 121 QVDILPTVSNLLGVSLDSHIHFGQDLLNQSAYNLLPQRYYLPTGSFVNNEELFLSGSGFK 180
                                                                       
Sbjct: 502 -                                                            560

Query: 181 DGQHYTLSGDGMKPLQATEDEFNRALELLHLSDSYVTQLPDRE 223
                                                      
Sbjct: 561                                             603


>STM1703_3 [T] COG2200 FOG: EAL domain
          Length = 251

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 0/174 (0%), Positives = 0/174 (0%), Gaps = 3/174 (1%)

Query: 1   VISMSSHNPFTIPEDKYKMALPERFEGTLVGNYIRAQNYADYALGQFIDELKQNGVWDNS 60
                                                                       
Sbjct: 361                                                              420

Query: 61  LIMLYGDHRGLPIFSLKEEDHVLLEEILNHKYTERDLINIPLIIASPGLTTPSVKEQLGG 120
                                                                       
Sbjct: 421 --                                                           478

Query: 121 QVDILPTVSNLLGVSLDSHIHFGQDLLNQSAYNLLPQRYYLPTGSFVNNEELFL 174
                                                                 
Sbjct: 479 -                                                      531


>STM1703_1 [T] COG2202 FOG: PAS/PAC domain
          Length = 227

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 0/174 (0%), Positives = 0/174 (0%), Gaps = 3/174 (1%)

Query: 1   VISMSSHNPFTIPEDKYKMALPERFEGTLVGNYIRAQNYADYALGQFIDELKQNGVWDNS 60
                                                                       
Sbjct: 361                                                              420

Query: 61  LIMLYGDHRGLPIFSLKEEDHVLLEEILNHKYTERDLINIPLIIASPGLTTPSVKEQLGG 120
                                                                       
Sbjct: 421 --                                                           478

Query: 121 QVDILPTVSNLLGVSLDSHIHFGQDLLNQSAYNLLPQRYYLPTGSFVNNEELFL 174
                                                                 
Sbjct: 479 -                                                      531


>STM1703_2 [T] COG2199 FOG: GGDEF domain
          Length = 182

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 0/174 (0%), Positives = 0/174 (0%), Gaps = 3/174 (1%)

Query: 1   VISMSSHNPFTIPEDKYKMALPERFEGTLVGNYIRAQNYADYALGQFIDELKQNGVWDNS 60
                                                                       
Sbjct: 361                                                              420

Query: 61  LIMLYGDHRGLPIFSLKEEDHVLLEEILNHKYTERDLINIPLIIASPGLTTPSVKEQLGG 120
                                                                       
Sbjct: 421 --                                                           478

Query: 121 QVDILPTVSNLLGVSLDSHIHFGQDLLNQSAYNLLPQRYYLPTGSFVNNEELFL 174
                                                                 
Sbjct: 479 -                                                      531


>BS_yqgS [M] COG1368 Phosphoglycerol transferase and related proteins,
           alkaline phosphatase superfamily
          Length = 346

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 0/218 (0%), Positives = 0/218 (0%), Gaps = 14/218 (6%)

Query: 1   VISMSSHNPFTIPEDKYKMALPERFEGTLVGNYIRAQNYADYALGQFIDELKQNGVWDNS 60
                                                                       
Sbjct: 404 -                                                            462

Query: 61  LIMLYGDHRGLPIFSLKEEDHVLLEEILNHKYTERDLINIPLIIASPGLT--TPSVKEQL 118
                                                                       
Sbjct: 463 --                                                           520

Query: 119 GGQVDILPTVSNLLGVSLDSHIHFGQDLLNQSAYNLLPQRYYLPTGSFVNNEELFLSGSG 178
                                                                       
Sbjct: 521 ----                                                         576

Query: 179 FKDGQHYTLSGDGMKPLQATEDEFNRALELLHLSDSYV 216
                                                 
Sbjct: 577 -----                                  609


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,750,930
Number of extensions: 871243
Number of successful extensions: 1369
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 16
Length of query: 229
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 126
Effective length of database: 26,499,029
Effective search space: 3338877654
Effective search space used: 3338877654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)