BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0023.p (381 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0647 [M] COG1368 Phosphoglycerol transferase and related prot... 197 3e-50 BS_yflE [M] COG1368 Phosphoglycerol transferase and related prot... 167 4e-41 BS_yfnI [M] COG1368 Phosphoglycerol transferase and related prot... 162 1e-39 STM1703_3 [T] COG2200 FOG: EAL domain 151 1e-36 STM1703_1 [T] COG2202 FOG: PAS/PAC domain 151 1e-36 >lin0647 [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 0/362 (0%), Positives = 0/362 (0%), Gaps = 12/362 (3%) Query: 1 MLAKSYFAWYYLFEDGPTWTTWLKEIPFILLIFCLIEWFATKRK-IAIYMIVNLLITVLF 59 + + + + + Sbjct: 9 SSLEVSTLGLGTMTF-GEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTET 67 Query: 60 FSLIVYHNHFGIIATSQVIGQAKQVGAVKKSIFSVLHPQYMLIFLDIIIISLVM-FSRKK 118 + H + K I I + + Sbjct: 68 YVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLD 127 Query: 119 AVAWKKAMSRRSNRKAVAALFCISLIICMMNIFPNQASM-NETVQAEQMGILNYEAYALL 177 +R + + +++ ++ + I A Sbjct: 128 LYQVHWP--QRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFG 185 Query: 178 AEHKEEQIELSQITQAAIDQKKGIQEQSNPALFGAAKGKNLIIIQMESFQNFLINLSIDG 237 + I + N + + + L ++ G Sbjct: 186 V--MRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTG 243 Query: 238 QEITPNMNKLAAGNFYFPRFYQQVGQGNTSDAEFIVNTSFYVPPDG--PATDIYAPKELP 295 + + A + Q + A ++ + + ++ Sbjct: 244 KYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRH--GLDPAQMALAFVRRQPF 301 Query: 296 SLPKLLQAQGYDTATFHTNEVDFWNRGELYKALGFDRYYDKAFFGEDDKVFYGASDEILY 355 Sbjct: 302 361 Query: 356 KK 357 Sbjct: 362 363 >BS_yflE [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 0/335 (0%), Positives = 0/335 (0%), Gaps = 23/335 (6%) Query: 49 MIVNLLITVLFFSLIVYHNHFGIIATSQVIGQAKQVGA-VKKSIFSVLHPQYMLIFLDII 107 + + L + V + + L + Sbjct: 73 LAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVH 132 Query: 108 IISLVMFSRKKAVAWKKAMSRRSNRKAVAALFCISLIICMMNIFPNQA--------SMNE 159 K A A +L + + Sbjct: 133 WPQRPTNCFGKL-------GYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFG 185 Query: 160 TVQAEQMGILN---YEAYALLAEHKEEQIELSQITQAAIDQKKGIQEQSNPALFGAAKGK 216 ++ + + + + + + + + S Sbjct: 186 VMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKY 245 Query: 217 NLIIIQMESFQNFLINLSIDGQEITPNMNKLAAGN--FYFPRFYQQVGQGNTSDAEFIVN 274 + + E T + Q Sbjct: 246 LNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVAST 305 Query: 275 TSFYVPPDGPATDIYAPKELPSLPKLLQAQGYDTATFHTNEVDFWNRGELYKALGFDRYY 334 Sbjct: 306 365 Query: 335 DKAFF--GEDDKVFYGASDEILYKKTSAELARMDQ 367 Sbjct: 366 400 >BS_yfnI [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 0/394 (0%), Positives = 0/394 (0%), Gaps = 42/394 (10%) Query: 3 AKSYFAWYYLFEDGPTWTTWLKEI-----PFILLIFCL-IEWFATKRKIAIYM-IVNLLI 55 Y + + + R+ I V+ Sbjct: 35 QLDYAVAQGINLIDVAEMY--PVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPS 92 Query: 56 TVLFFSLIVYHNHFGIIATSQVIGQAKQVGAVKKSIFSVLHPQYMLIFLDIIIISLVMFS 115 + + K++ ++ V PQ + S Sbjct: 93 RNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS- 151 Query: 116 RKKAVAWKKAMSRRSNRKAVAALFCISLI-ICMMNIFPNQA--------SMNETVQAEQM 166 + + I + N + Sbjct: 152 ------APAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQ 205 Query: 167 GILNYEAYALLAEHKEEQIELSQITQAAIDQKKGIQE-------QSNPALFGAAKGKNLI 219 + + E SQ + + + GA Sbjct: 206 NPYSLLNRSFEVGLAEV----SQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSR 261 Query: 220 IIQMESFQNFLINLSIDGQEITPNMNKLAAGN---FYFPRFYQQVGQGNTSDAEFIVNTS 276 + Q + ++ P + T D S Sbjct: 262 FTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIES 321 Query: 277 FYVPPDGPATDIYAPKELPSLPKLL-QAQGYDTATFHTNEVDFWNRGELYKALGFDRYYD 335 ++ Sbjct: 322 LHLELSEDVLAEIEAVHQVYTYPAP 381 Query: 336 KAFFGEDDK--VFYGASDEILYKKTSAELARMDQ 367 Sbjct: 382 415 >STM1703_3 [T] COG2200 FOG: EAL domain Length = 251 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 0/236 (0%), Positives = 0/236 (0%), Gaps = 4/236 (1%) Query: 134 AVAALFCISLIICMMNIFPNQASMNETVQAEQMGILNYEAYALLAEHKEEQIELSQITQA 193 + + + A ++ L+ A + K +Q + I + Sbjct: 122 SCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQ 181 Query: 194 AIDQKKGIQEQSNPALFGAAKGKNLIIIQMESFQNFLINLSIDGQEITPNMNKLA--AGN 251 + + + ++ FL ++ ++ + + Sbjct: 182 PL--SQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFE 239 Query: 252 FYFPRFYQQVGQGNTSDAEFIVNTSFYVPPDGPATDIYAPKELPSLPKLLQAQGYDTATF 311 Sbjct: 240 299 Query: 312 HTNEVDFWNRGELYKALGFDRYYDKAFFGEDDKVFYGASDEILYKKTSAELARMDQ 367 Sbjct: 300 355 >STM1703_1 [T] COG2202 FOG: PAS/PAC domain Length = 227 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 0/236 (0%), Positives = 0/236 (0%), Gaps = 4/236 (1%) Query: 134 AVAALFCISLIICMMNIFPNQASMNETVQAEQMGILNYEAYALLAEHKEEQIELSQITQA 193 A+ + + + + A+ + H E + Sbjct: 122 AILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSRREAVASRHYIENFFRNGNAYE 181 Query: 194 AIDQKKGIQEQSNPALFGAAKGKNLIIIQMESFQNFLINLSIDGQEITPNMNKLA--AGN 251 Sbjct: 182 IE-- 239 Query: 252 FYFPRFYQQVGQGNTSDAEFIVNTSFYVPPDGPATDIYAPKELPSLPKLLQAQGYDTATF 311 Sbjct: 240 299 Query: 312 HTNEVDFWNRGELYKALGFDRYYDKAFFGEDDKVFYGASDEILYKKTSAELARMDQ 367 Sbjct: 300 355 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,758,145 Number of extensions: 1017486 Number of successful extensions: 2384 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 2363 Number of HSP's successfully gapped: 16 Length of query: 381 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 273 Effective length of database: 25,922,359 Effective search space: 7076804007 Effective search space used: 7076804007 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 117 (49.7 bits)