BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0021.p (232 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA0614 [TK] COG0745 Response regulators consisting of a CheY-lik... 273 2e-73 CAC0224 [TK] COG0745 Response regulators consisting of a CheY-li... 213 2e-55 lin1856 [TK] COG0745 Response regulators consisting of a CheY-li... 213 2e-55 SP1633 [TK] COG0745 Response regulators consisting of a CheY-lik... 204 7e-53 CAC0371 [TK] COG0745 Response regulators consisting of a CheY-li... 186 3e-47 >SA0614 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 224 Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 125/223 (56%), Positives = 169/223 (75%) Query: 6 KIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDGFH 65 +I+L+EDD TLF E+K+ L QW + V GI DFGKV+ F + PE+VI+D+QLP++DGF+ Sbjct: 2 QILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFY 61 Query: 66 WCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVYNY 125 WCR +R SNVPI+ LSSRD+P D VMSM+ GADD++QKPF+ VLIAK+QA RRVY + Sbjct: 62 WCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEF 121 Query: 126 STERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRKLW 185 + E TW+ A ++ K++I ++ L+K EM+IL+IL+ K++IV R+ +I LW Sbjct: 122 TAEEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALW 181 Query: 186 DNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYMATE 228 D+E FVSDNTLTVNVNRLRKKL + +D+ IETKVG+GYMA E Sbjct: 182 DDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE 224 >CAC0224 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 223 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 149/222 (67%), Gaps = 1/222 (0%) Query: 4 LFKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDG 63 +++IM+IED+ + IK+ L +WS+E + + DF + ++F KP LV++DI LP DG Sbjct: 1 MYRIMIIEDEEKIRNIIKKSLEKWSFEAHAVEDFNDIFEQFVKVKPNLVLMDINLPVCDG 60 Query: 64 FHWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVY 123 F+WC +R S VP+I LSSR D+VM++ G DD+I KPF E+L+AKI A LRR Y Sbjct: 61 FYWCSKIRNISKVPVIFLSSRSSNMDVVMAVNMGGDDYITKPFSIEILMAKINAILRRTY 120 Query: 124 NYSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRK 183 +YS + ++ I NT+ S LTKNE I+ +L+++ D IV RE+++++ Sbjct: 121 SYSETEMDTIEFKDVIISLKNNTVYYNENSIELTKNEFKIIYVLMKNHDSIVSREKIMQE 180 Query: 184 LWDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYM 225 LW +E F+ DNTLTVN+NRLRKKL+ +G+D +I+T GQGY+ Sbjct: 181 LWQDESFIDDNTLTVNINRLRKKLKEIGVD-FIKTIKGQGYV 221 >lin1856 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 149/223 (66%), Gaps = 1/223 (0%) Query: 4 LFKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDG 63 + K+ ++EDD + I++ LS+W +E+ + DF +LQEF + +P+LVI+D+ LP FDG Sbjct: 1 MVKVYIVEDDEVIRDTIRKHLSKWGFEIGVVDDFNNILQEFLSFEPQLVILDVNLPFFDG 60 Query: 64 FHWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVY 123 F+WC +R SNVPII LSSR+ D +M M GAD +I+KP +VL+A+I A LRR Y Sbjct: 61 FYWCNQIREVSNVPIIFLSSRNSRMDQIMGMNMGADYYIEKPVDLDVLMARINALLRRTY 120 Query: 124 NYST-ERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIR 182 +Y+ E + + NT+T + LTKNE LIL L++ K IV R+E++R Sbjct: 121 SYADLEEANVMEHNNVFLHIDTNTLTHLEDKIELTKNEFLILYELMKQKGSIVSRDEIMR 180 Query: 183 KLWDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYM 225 LW++E FV DNTLTVNV R+RKKL +GLD +I+TK GQGYM Sbjct: 181 ALWEDESFVDDNTLTVNVVRIRKKLAEIGLDEFIKTKKGQGYM 223 >SP1633 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 148/221 (66%), Gaps = 1/221 (0%) Query: 4 LFKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDG 63 + KI+LIEDD + +I + LS+W +EV + DF +VL F ++P LV++DI LP F+G Sbjct: 1 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG 60 Query: 64 FHWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVY 123 +HWC+ +R S VPI+ LSSRD D+VM++ GADDF+ KPF +VL+AK+Q LRR Y Sbjct: 61 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY 120 Query: 124 NYSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRK 183 + + + L+ + G + + + + LTKNE IL++L E IV R++L+R+ Sbjct: 121 EFGRDESLLE-YAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRE 179 Query: 184 LWDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGY 224 LW+++ F+ DNTL+VNV RLRKKLE GL +IETK G GY Sbjct: 180 LWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220 >CAC0371 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 150/224 (66%), Gaps = 5/224 (2%) Query: 4 LFKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDG 63 ++KI++IEDD L +E L +++YEV+ I DF KV +EF PELV++D+ LP +DG Sbjct: 1 MYKILIIEDDKKLAEFTEEYLKRYNYEVFKIFDFKKVEEEFEKINPELVLLDVNLPYYDG 60 Query: 64 FHWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVY 123 F+ CRI R S PII +S+R + + ++ GADD+I KPF FE+L+AK+QA++RR Y Sbjct: 61 FNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFELLLAKVQASIRRTY 120 Query: 124 N-YSTERTELKTWRGATIEYVKNT--ITLEHESALLTKNEMLILKILVESKDRIVEREEL 180 YS + +E+ T G ++ KNT +T + + LTKNE+ ++ L+++ +++V REEL Sbjct: 121 GEYSEDNSEVLTVSGIIVD--KNTFKMTYKDKEVELTKNELKLITKLLKNINKVVTREEL 178 Query: 181 IRKLWDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGY 224 + +LWD FV DNTLTVNV R++ KL +G+ ++ K G GY Sbjct: 179 LEELWDESSFVDDNTLTVNVTRIKNKLSEVGIKNVVKNKRGIGY 222 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,211,335 Number of extensions: 606166 Number of successful extensions: 4024 Number of sequences better than 1.0e-05: 332 Number of HSP's gapped: 3829 Number of HSP's successfully gapped: 332 Length of query: 232 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 129 Effective length of database: 26,499,029 Effective search space: 3418374741 Effective search space used: 3418374741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)