BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0019.p (250 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytsC [V] COG1136 ABC-type antimicrobial peptide transport sys... 422 e-118 SA0616 [V] COG1136 ABC-type antimicrobial peptide transport syst... 308 4e-84 SA2492 [V] COG1136 ABC-type antimicrobial peptide transport syst... 299 3e-81 lin1859 [V] COG1136 ABC-type antimicrobial peptide transport sys... 293 1e-79 CAC0226 [V] COG1136 ABC-type antimicrobial peptide transport sys... 264 9e-71 >BS_ytsC [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust. Identities = 13/250 (5%), Positives = 42/250 (16%) Query: 1 MILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQ 60 + + Q + + + + R+S+ Sbjct: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 61 GTIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAH 120 + + + F Q + T + + Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 121 QKFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASD 180 + + + + + ++ S R + + Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 181 LLNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMK 240 + + Q A Q + E + + + Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 241 TQSVLGGVQQ 250 T Sbjct: 242 TVYGTCMPML 251 >SA0616 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 308 bits (790), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 13/247 (5%), Positives = 42/247 (17%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 + + Q + + + + R+S+ Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 + + + F Q + T + + + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 + + + + ++ S R + + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 182 LNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMKT 241 + + Q A Q + E + + + T Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 Query: 242 QSVLGGV 248 Sbjct: 243 VYGTCMP 249 >SA2492 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 16/247 (6%), Positives = 34/247 (13%), Gaps = 1/247 (0%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 + + Q L ++ G + T R Sbjct: 3 QAGIIRDLLIWLEGHLDQ-PLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 + + + L F S GI Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 +F + E S + L Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 182 LNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMKT 241 + + + T A + + + Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 242 QSVLGGV 248 + Sbjct: 242 TVYGTCM 248 >lin1859 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 12/246 (4%), Positives = 40/246 (16%) Query: 2 ILEANKIYKTYGNKFNRQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVSQG 61 + ++ L + + ++ + + + Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 62 TIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREAHQ 121 Q +Q F++ + + R Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 122 KFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSASDL 181 + S +Q + + F + Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 182 LNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIMKT 241 D + +++ A Y + + + I+ Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 Query: 242 QSVLGG 247 Sbjct: 244 YGTCMP 249 >CAC0226 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 264 bits (675), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 14/248 (5%), Positives = 47/248 (18%), Gaps = 2/248 (0%) Query: 2 ILEANKIYKTYGNKFN--RQEVLKGIDLQVSKGEFVGIMGASGSGKTTLLNVLSSIDRVS 59 + + + + M +G + + S Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 60 QGTIEIEGKEFTRMKEKQLAEFRKQHLGFIFQEYNLLDTLTVKENVLLPLSITGISRREA 119 + + + + + + ++ +++ L + I R Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 120 HQKFEQVAGELGIYELKDKYPAEISGGQKQRTSAARAFIHDPSIIFADEPTGALDSKSAS 179 E L L + ++ + PT + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 180 DLLNKLADMNTKRQATIVMVTHDAIAASYCSRVVFIRDGQIYTQLNKGDEARQSFFNDIM 239 + + + + D + + G Y + Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 Query: 240 KTQSVLGG 247 + + Sbjct: 243 VYGTCMPM 250 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,875,872 Number of extensions: 628606 Number of successful extensions: 17150 Number of sequences better than 1.0e-05: 2168 Number of HSP's gapped: 14484 Number of HSP's successfully gapped: 2385 Length of query: 250 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 146 Effective length of database: 26,383,695 Effective search space: 3852019470 Effective search space used: 3852019470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)