BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0015.p
         (80 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0484 [G] COG4209 ABC-type polysaccharide transport system, per...    77   7e-15
BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe...    74   6e-14
BS_yteQ [G] COG4209 ABC-type polysaccharide transport system, pe...    72   2e-13
SP1798 [G] COG4209 ABC-type polysaccharide transport system, per...    69   1e-12
BH1065 [G] COG4209 ABC-type polysaccharide transport system, per...    63   9e-11

>BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease
           component
          Length = 325

 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 55/79 (69%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + ILK G ++ +G+E V L+ N M  +VA++F TYVY  GL E  +SY+ AVG F+++V 
Sbjct: 246 LLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVG 305

Query: 61  MVMLLSANAVSKRLGGNGL 79
           ++M++ AN ++K+ G  G+
Sbjct: 306 LIMVMLANWLAKKFGEEGV 324


>BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease
           component
          Length = 318

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 54/79 (68%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + IL+ GS + +G+E+V L+ N +   VAD+F TYVY  G+ +  YSY+ AVGLF+++V 
Sbjct: 239 LLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVG 298

Query: 61  MVMLLSANAVSKRLGGNGL 79
           ++++  AN ++K+    GL
Sbjct: 299 IILIFGANYIAKKFDQEGL 317


>BS_yteQ [G] COG4209 ABC-type polysaccharide transport system, permease
           component
          Length = 163

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 54/80 (67%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + ILK G  + +G+E V LL N    +VA++F TYVY  GL +  +SY+ AVG+F+A V 
Sbjct: 84  LLILKIGDTLELGFEHVYLLLNATNREVAEIFDTYVYTAGLKQGQFSYSTAVGVFKAAVG 143

Query: 61  MVMLLSANAVSKRLGGNGLW 80
           +++++ AN ++K+ G  G++
Sbjct: 144 LILVMLANRLAKKFGEEGIY 163


>SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease
           component
          Length = 305

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 2   FILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVAM 61
           F+L  G ++ VGYEK  L+   +    +++ STYVY+ GL+  +YSY+ AVGLF A++ +
Sbjct: 227 FVLAAGGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINV 286

Query: 62  VMLLSANAVSKRL-GGNGL 79
           V+L++ N + KR+  G G+
Sbjct: 287 VLLVAVNQIVKRMNNGEGI 305


>BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease
           component
          Length = 317

 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 44/62 (70%)

Query: 4   LKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVAMVM 63
           L  G+++  G++++  LYNP+ Y   D+  TYVYR  L+  ++SY  AVGLF++L+++V+
Sbjct: 241 LSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVL 300

Query: 64  LL 65
           ++
Sbjct: 301 II 302


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,117,477
Number of extensions: 144683
Number of successful extensions: 400
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 7
Length of query: 80
Length of database: 38,378,431
Length adjustment: 51
Effective length of query: 29
Effective length of database: 32,496,397
Effective search space: 942395513
Effective search space used: 942395513
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)