BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0033.p (367 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Ta1199 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase ... 105 1e-22 STM3978 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase... 82 1e-15 PA5237 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase ... 82 2e-15 AF0209 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase ... 80 5e-15 ZyigC [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase a... 79 9e-15 >Ta1199 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Length = 480 Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 11/203 (5%) Query: 8 RDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPFTVVGRPP 67 R+ + V+ G I P ETR EGPFGDH GYYSL FPV + K+ ++ I+P T+VG+ Sbjct: 255 RNFEIVLEGYIDPAETRIEGPFGDHTGYYSLEEQFPVFHIKKIIERRDRIYPTTIVGKLW 314 Query: 68 QEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQLKQPAEL 127 ED G+ I + ++ +P V +++ ++ A H ++ +RY P Sbjct: 315 HEDVIMGKTIERMFLPLIQMVMPEVVDINTMEEAVFHNMVIVSIKKRY--------PGHA 366 Query: 128 LTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHFQTNTTID 187 + + G GQ+ +K + + ++ ++ HN ++ + + RI+ RD+ T D Sbjct: 367 KKVMFGLWGMGQMMFSKIIVVVDDD---INVHNRKEVIWAMTTRIDPDRDVIIIPGTVTD 423 Query: 188 TLDYSGTGINSGSKVVFAAVGEQ 210 +LD++ N GSK+ A ++ Sbjct: 424 SLDHASPIFNYGSKMGIDATKKR 446 >STM3978 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Length = 492 Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 28/222 (12%) Query: 5 CVSRD------ADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIF 58 C+S D A+ ++ G I PGE PEGP+GDH GYY+ FPV V + ++ AI+ Sbjct: 258 CLSNDLEVPASAEIILEGYIEPGEMAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIY 317 Query: 59 PFTVVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPY 118 T GRPP E G ++E+ ++++ P + + + + L ++Y + Sbjct: 318 HSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGH 377 Query: 119 QQLKQPAELLTIANRILGTGQLSLAKYLF----ITAEEERPVSTHNIEDFLAYILERINL 174 A R++ L ++++ I +++ V+ + D + I R++ Sbjct: 378 ------------AKRVMMGVWSFLRQFMYTKFVIVCDDD--VNARDWNDVIWAITTRMDP 423 Query: 175 HRDIHFQTNTTIDTLDYSGTGINSGSKVVFAAV----GEQKR 212 RD NT ID LD++ GSK+ A GE +R Sbjct: 424 ARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQR 465 >PA5237 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Length = 488 Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 14/211 (6%) Query: 6 VSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPFTVVGR 65 V A+ V+ G IHPGE EGP+GDH GYY+ FPV V +V +Q I+ T GR Sbjct: 262 VPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVDRFPVFTVERVTRRQKPIYHSTYTGR 321 Query: 66 PPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQLKQPA 125 PP E G ++E+ ++++ P + + + + + ++Y + + Sbjct: 322 PPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAVVTMKKQYPGHAK----R 377 Query: 126 ELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHFQTNTT 185 +L + + + Q K++ +T ++ + + D + I R++ RD NT Sbjct: 378 VMLGVWSFLR---QFMYTKFVIVTDDD---IDARDWNDVIWAITTRMDPKRDTVMIDNTP 431 Query: 186 IDTLDY----SGTGINSGSKVVFAAVGEQKR 212 ID LD+ SG G G GE R Sbjct: 432 IDYLDFASPVSGLGSKMGLDATHKWPGETSR 462 >AF0209 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Length = 481 Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 11/199 (5%) Query: 4 FCVSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPFTVV 63 V +A+ ++ G + E R EGPFGDH GYY+ P+PV + + ++ I+ TVV Sbjct: 251 LLVPANAEIILEGYVRVDEMRVEGPFGDHTGYYTPPEPYPVFHITHITHRENPIYHATVV 310 Query: 64 GRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQLKQ 123 G+PP ED G+ + ++ P + +++ H L +RY Sbjct: 311 GKPPMEDAWLGKATERIFLPILRMMHPEIVDINLPVEGAFHNLAIVSIKKRY-------- 362 Query: 124 PAELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHFQTN 183 P + + I GTG LSL K I + V+ H++ + + + R + RD+ Sbjct: 363 PGQAKKVMYAIWGTGMLSLTK---IVVVVDDDVNVHDMREVVWAVTSRFDPARDVVILPP 419 Query: 184 TTIDTLDYSGTGINSGSKV 202 + D+LD+S N K+ Sbjct: 420 SPTDSLDHSAYIPNLAGKL 438 >ZyigC [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Length = 497 Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 28/222 (12%) Query: 5 CVSRD------ADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIF 58 C+S D A+ V+ G I GE PEGP+GDH GYY+ FPV V + ++ AI+ Sbjct: 258 CISNDLEVPASAEIVLEGYIEQGEMAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIY 317 Query: 59 PFTVVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPY 118 T GRPP E G ++E+ ++++ P + + + + L ++Y + Sbjct: 318 HSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGH 377 Query: 119 QQLKQPAELLTIANRILGTGQLSLAKYLF----ITAEEERPVSTHNIEDFLAYILERINL 174 A R++ L ++++ I +++ V+ + D + I R++ Sbjct: 378 ------------AKRVMMGVWSFLRQFMYTKFVIVCDDD--VNARDWNDVIWAITTRMDP 423 Query: 175 HRDIHFQTNTTIDTLDYSGTGINSGSKVVFAAV----GEQKR 212 RD NT ID LD++ GSK+ A GE +R Sbjct: 424 ARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQR 465 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,828,709 Number of extensions: 1232223 Number of successful extensions: 2131 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 2122 Number of HSP's successfully gapped: 11 Length of query: 367 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 259 Effective length of database: 25,922,359 Effective search space: 6713890981 Effective search space used: 6713890981 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)