BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0026.p (244 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy1085 [V] COG1131 ABC-type multidrug transport system, ATPase ... 219 3e-57 BH0818 [V] COG1131 ABC-type multidrug transport system, ATPase c... 201 8e-52 CC3280 [V] COG1131 ABC-type multidrug transport system, ATPase c... 197 2e-50 CAC0138 [V] COG1131 ABC-type multidrug transport system, ATPase ... 186 3e-47 lin0750 [V] COG1131 ABC-type multidrug transport system, ATPase ... 183 2e-46 >SPy1085 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 229 Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/225 (48%), Positives = 157/225 (69%), Gaps = 6/225 (2%) Query: 4 ILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEILL 63 +L+ ++L K + ++ + +V++ IP G VY L+GPNGAGK+T +K++TGL+ + G I+ Sbjct: 1 MLKIQNLKKSYGKRTILNNVNMNIPKGKVYALIGPNGAGKSTIMKILTGLVSKTSGSIIF 60 Query: 64 GGKPWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVDLQETGS 123 G+ W R+ L +IG++IE P LY NL+A +N+ V +LG + I +L+ V L Sbjct: 61 EGREWSRRDLRKIGSIIEEPPLYKNLSAYDNMKVVTTMLGVSESTILPLLNKVGLGNIDK 120 Query: 124 KKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQGITVIL 183 + QFSLGMKQRLGIAI+L+N P+LLILDEPTNGLDP+GIQELRE+I SF ++G+T+++ Sbjct: 121 RPVKQFSLGMKQRLGIAISLINSPKLLILDEPTNGLDPIGIQELREIIESFKSEGMTIMI 180 Query: 184 SSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHKGEDLETLF 228 SSHILSEVE +AD+I I G++ E + E+LE LF Sbjct: 181 SSHILSEVEHLADFI------GFIYEGKIILEKEYDGSENLEELF 219 >BH0818 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 314 Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 100/203 (49%), Positives = 142/203 (69%), Gaps = 5/203 (2%) Query: 1 MQYILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGE 60 M ++ T++L K F+ ++ + +++L + G +YG LGPNGAGKTT +KM+ ++PS GE Sbjct: 1 MTKVITTRNLTKTFQGKEIISNLNLHVNKGEIYGFLGPNGAGKTTVMKMLMNFVKPSAGE 60 Query: 61 ILLGGK---PWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTA-QRIDEVLHTV 116 I L G+ + L+RIG++IE P Y L+ARENL +H + +G I+E L V Sbjct: 61 IELFGQRLTSQSYEMLKRIGSMIEFPIFYEKLSARENLELHCEYMGYYKPSAIEEALEMV 120 Query: 117 DLQETGSKKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPA 176 LQ TGSK FSLGMKQRLGIA A+ +PELLILDEP NGLDP+GI+E+R+L ++ Sbjct: 121 KLQLTGSKAVKDFSLGMKQRLGIARAICTKPELLILDEPINGLDPVGIKEIRQLFQTLCN 180 Query: 177 Q-GITVILSSHILSEVEQIADYI 198 + G+T+++SSHILSE+EQIAD + Sbjct: 181 EYGVTILISSHILSEIEQIADTV 203 >CC3280 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 311 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 10/224 (4%) Query: 1 MQYILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGE 60 M +ET+ L++RF +++AV+D+S+ +P VYG LG NGAGKTTTLKMI GL+RPS G Sbjct: 1 MSAAIETQGLSRRFGQRRAVDDLSMTVPERAVYGFLGRNGAGKTTTLKMILGLIRPSVGT 60 Query: 61 ILLGGKPWERKQL---ERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVD 117 + G R ++ ++GAL+E+ YGNLT RENL + A L+G ID VL V+ Sbjct: 61 ARVNGIDVSRDRIGAARQVGALLEAHGFYGNLTGRENLGLTATLIGLRNSEIDRVLDVVE 120 Query: 118 LQETGSKKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQ 177 ++ +K +SLGM+QRLG+A A+L P +L+LDEPTNGLDP GI ++R +RS P + Sbjct: 121 MRADADRKVGGYSLGMRQRLGLARAMLGAPPILVLDEPTNGLDPDGIADMRRFLRSLPER 180 Query: 178 -GITVILSSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHK 220 G TV+LSSH+L E+EQ A ++ +++ GRL E ++ + Sbjct: 181 TGATVLLSSHLLGEIEQTATHV------GVVNDGRLVLEGELSR 218 >CAC0138 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 312 Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 92/217 (42%), Positives = 143/217 (65%), Gaps = 11/217 (5%) Query: 1 MQYILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGE 60 M +LE K + K +++ ++ +S + G ++G LGPNGAGKTTT++M+ GL++P+ G Sbjct: 1 MGVVLEVKDVKKHIGKREIIKGISFSVEEGQIFGFLGPNGAGKTTTIRMLVGLIKPNSGS 60 Query: 61 ILLGGKPWER---KQLERIGALIESPALYGNLTARENLTVHAKLLGQTA-QRIDEVLHTV 116 I + G ++ K L +G ++E+P +YG LT RENL +AK+ G + +RIDEV + Sbjct: 61 IKIMGHDIQKEKEKALSNVGCIVENPDMYGFLTGRENLIQYAKMYGSVSKERIDEVAEII 120 Query: 117 DLQETGSKKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPA 176 L++ + K ++SLGMKQRLG+ ALL RP+LLILDEPTNGLDP+GI + R ++R Sbjct: 121 GLKDRINDKVKKYSLGMKQRLGLGQALLVRPKLLILDEPTNGLDPVGIMDFRRIVRLMAE 180 Query: 177 QGIT-VILSSHILSEVEQIADYIXXXXXXXIISGGRL 212 + + V +SSHIL+E++Q+ D + I+GG + Sbjct: 181 ENKSAVFISSHILAEIQQVCDTV------AFINGGEI 211 >lin0750 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 301 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/215 (43%), Positives = 145/215 (67%), Gaps = 5/215 (2%) Query: 5 LETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEILLG 64 L+ +L+K+ ++++ ++ +S ++ G V+G LGPNGAGKTTT++MI GL++P+ G IL+G Sbjct: 6 LQVTNLHKKIRKREIIKGISFEVRPGEVFGFLGPNGAGKTTTIRMIVGLIKPTSGTILIG 65 Query: 65 GKPWERKQLER---IGALIESPALYGNLTARENLTVHAKLLGQTA-QRIDEVLHTVDLQE 120 GK + E +G+++E+P Y LT +ENL A++ +RI EV V L++ Sbjct: 66 GKDIRKNFTEAMRGLGSIVENPEFYTFLTGQENLAYFARMDPSIKKERIQEVTELVGLEK 125 Query: 121 TGSKKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFP-AQGI 179 + + S +SLGM+QRLGIA ALL+ P+LLILDEPTNGLDP GI E+R+ IR+ +GI Sbjct: 126 RINDRVSTYSLGMRQRLGIAQALLSSPKLLILDEPTNGLDPSGIHEMRDFIRALARNEGI 185 Query: 180 TVILSSHILSEVEQIADYIXXXXXXXIISGGRLGH 214 +V++SSH+LSE+E + D + II ++ H Sbjct: 186 SVLVSSHLLSEIELLCDRVAIMTDGTIIKTDQVSH 220 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,638,718 Number of extensions: 777331 Number of successful extensions: 8761 Number of sequences better than 1.0e-05: 2146 Number of HSP's gapped: 6252 Number of HSP's successfully gapped: 2384 Length of query: 244 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 140 Effective length of database: 26,383,695 Effective search space: 3693717300 Effective search space used: 3693717300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)