BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0566.0016.p
         (261 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins   265   5e-71
BH3842 [T] COG4753 Response regulator containing CheY-like recei...    72   8e-13
BH0401_1 [K] COG2207 AraC-type DNA-binding domain-containing pro...    71   1e-12
lin2267 [K] COG2207 AraC-type DNA-binding domain-containing prot...    70   3e-12
BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins    67   4e-11

>BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 261

 Score =  265 bits (678), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 158/216 (73%)

Query: 5   FAEIDGVIAYIHQHMYDHLPLERLARYAGYSPYHFARIFKERTGLSPLYYVSSHRLQRAK 64
           + E+D  I+YIH H+Y+ L L  +A Y GYS YHF+R+FKE+TGLSPLYYVSS RLQ+AK
Sbjct: 5   YNEMDVAISYIHNHLYEPLSLSHIASYVGYSSYHFSRLFKEKTGLSPLYYVSSLRLQKAK 64

Query: 65  DLLLRTGLTVRDISLEIGQQSLGTFTSRFAARVGMSPAEFRNSVQYAGDQMSSLRKLQDW 124
           +LLL T LTVRDI LEIGQQSLGTFT+RF   VGMSP+ FR S+      + SL+ L DW
Sbjct: 65  ELLLNTNLTVRDIGLEIGQQSLGTFTTRFTKCVGMSPSHFRESMNQVNHSLHSLQMLSDW 124

Query: 125 RSSYPISRLPSSVHGTISAEVPFDGVILIGLFAKPIPEGLPLYGTLLSSLGHFHFDHVAP 184
           R+S       S+V GTI +E P +G ILIGLF+KPIPEGLPLYG LLSS G F F  V P
Sbjct: 125 RTSLQSIHPFSTVTGTIDSEAPLEGFILIGLFSKPIPEGLPLYGNLLSSTGAFSFTGVTP 184

Query: 185 GTYYLLATSISWGTRTLDFMLPHSTLRTRSRAPIHV 220
           G YYL+ATSISW  +  D +LP++TLR R + PI V
Sbjct: 185 GIYYLMATSISWSMQAKDILLPYTTLRGRIKEPIIV 220


>BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 530

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 63/105 (60%)

Query: 14  YIHQHMYDHLPLERLARYAGYSPYHFARIFKERTGLSPLYYVSSHRLQRAKDLLLRTGLT 73
           Y+H H  + L L+ LA++ G SPY+ +++FKER  L+   YV+  R++ AK LL  T  +
Sbjct: 423 YVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKS 482

Query: 74  VRDISLEIGQQSLGTFTSRFAARVGMSPAEFRNSVQYAGDQMSSL 118
           +++I+ EIG +    F+  F    G SP+++R S+   G +  +L
Sbjct: 483 LKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKSINGLGPKEDTL 527


>BH0401_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 141

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 56/102 (54%)

Query: 6   AEIDGVIAYIHQHMYDHLPLERLARYAGYSPYHFARIFKERTGLSPLYYVSSHRLQRAKD 65
           A    V  YI  H  D + L+ LA  +  S YHF+R+FKE TG SP+ YV+  R+Q+A  
Sbjct: 7   ARFHAVFQYIETHYKDRIDLDTLANRSHLSKYHFSRLFKELTGDSPMAYVNKVRVQKAIP 66

Query: 66  LLLRTGLTVRDISLEIGQQSLGTFTSRFAARVGMSPAEFRNS 107
           LL  T  TV +I+   G  S+ TF + F     ++P+  R +
Sbjct: 67  LLTSTKKTVLEIASLCGFDSVSTFNATFKKHYDLTPSYVRKN 108


>lin2267 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 292

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 63/106 (59%)

Query: 3   ERFAEIDGVIAYIHQHMYDHLPLERLARYAGYSPYHFARIFKERTGLSPLYYVSSHRLQR 62
           E   ++D + +Y+ +H  + + L+ +A Y G+S Y+F + FK  TG++ + +++ +RL +
Sbjct: 183 ETLQKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRLNK 242

Query: 63  AKDLLLRTGLTVRDISLEIGQQSLGTFTSRFAARVGMSPAEFRNSV 108
           AK +LL     V +++   G  S+ TF   F   +G++P ++R ++
Sbjct: 243 AKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTI 288


>BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 278

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%)

Query: 8   IDGVIAYIHQHMYDHLPLERLARYAGYSPYHFARIFKERTGLSPLYYVSSHRLQRAKDLL 67
           I+ V+ YIH H  + + +++LA  +G     F+ +FK+  G+ P+ Y+  +RL+RAK+LL
Sbjct: 170 IEQVVEYIHHHYMEPMTVKKLADMSGMGVKPFSYLFKKYIGMFPIDYLIQYRLKRAKNLL 229

Query: 68  LRTGLTVRDISLEIGQQSLGTFTSRFAARVGMSPAEFR 105
           + +  ++ DI+  IG      F+  F   +G SP  FR
Sbjct: 230 VSSNSSIADIAESIGYLDALYFSRLFKKHIGCSPTAFR 267


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,083,116
Number of extensions: 725989
Number of successful extensions: 2507
Number of sequences better than 1.0e-05: 818
Number of HSP's gapped: 2463
Number of HSP's successfully gapped: 818
Length of query: 261
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 157
Effective length of database: 26,383,695
Effective search space: 4142240115
Effective search space used: 4142240115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 115 (48.9 bits)