BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0015.p (527 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 109 1e-23 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 103 7e-22 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 102 1e-21 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 100 6e-21 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 99 2e-20 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 0/297 (0%), Positives = 0/297 (0%), Gaps = 8/297 (2%) Query: 215 IRSFVSPVGKLQAALREIAEGDLRQQINSPYNDELGRLSHHFDHMVRRVRDMLRQTLNAA 274 Sbjct: 302 361 Query: 275 SSLADYSHSFQQSSTITAHTNQDILRTIQEISAGAEQQAVQSEQSTVLLQELERGVQEIT 334 Sbjct: 362 421 Query: 335 DYTDMMLSTSETANRNTRKGA----DTVTALREISRHSRDSITKVYEALETLVQQSGDIS 390 Sbjct: 422 ---- 477 Query: 391 RITNSITEISKQTNILSLNXXXXXXXXXXSGKGFAVIADEVRHLSVQTNDSSIHISKIIS 450 Sbjct: 478 537 Query: 451 ELQDSMAGFQKYMLGTKKNLEAQDHQVVETLASFEAIDESITGISRQIGQIHQKVEQ 507 Sbjct: 538 594 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 160/316 (50%), Gaps = 24/316 (7%) Query: 215 IRSFVSPVGKLQAALREIAEGDLRQQINSPYNDELGRLSHHFDHMVRRVRDMLRQTLNAA 274 +RS P+ +L + + I+ GDL + I DELG L F+ M + +R ++ N+ Sbjct: 303 VRSITKPLKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQNSV 362 Query: 275 SSLADYSHSFQQSSTITAHTNQDILRTIQEISAGAEQQAVQSEQSTVLLQELERGVQEI- 333 +++A S S+ T+ + I I++ S G E+Q+ + E S+ L + G+Q++ Sbjct: 363 NNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVS 422 Query: 334 ---TDYTDMMLSTSETANRNTRKGADTVTALREISRHSRDSITKVYEALETLVQQSGDIS 390 +D T + ++E A + T + I++ S+ + ++ L +S DI+ Sbjct: 423 QTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQ----SVQQAEAVVKGLEGKSKDIT 478 Query: 391 RITNSITEISKQTNILSLNXXXXXXXXXXSGKGFAVIADEVRHLSVQTNDSSIHISK--- 447 I I I+ QTN+L+LN SG+GF+V+A+EVR L+VQ+ DS+ I K Sbjct: 479 SILRVINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQ 538 Query: 448 -IISELQDSMAGFQKYMLGTKKNLEAQDHQVV--ETLASFEAIDESITGISRQIGQIHQK 504 I++E+ S+ F++ N E Q VV T SF++I I+ ++ ++ Sbjct: 539 EIVAEIDTSLHMFKEV------NQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNST 592 Query: 505 VEQ----TRHINSRLA 516 VEQ ++H+++ ++ Sbjct: 593 VEQLSDRSQHVSAAVS 608 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 0/300 (0%), Positives = 0/300 (0%), Gaps = 16/300 (5%) Query: 216 RSFVSPVGKLQAALREIAEGDLRQQINSPYNDELGRLSHHFDHMVRRVRDMLRQTLNAAS 275 Sbjct: 303 362 Query: 276 SLADYSHSFQQSSTITAHTNQDILRTIQEISAGAEQQAVQSEQSTVLLQELERGVQEI-- 333 Sbjct: 363 422 Query: 334 --TDYTDMMLSTSETANRNTRKGADTVTALREISRHSRDSITKVYEALETLVQQSGDISR 391 Sbjct: 423 ---- 478 Query: 392 ITNSITEISKQTNILSLNXXXXXXXXXXSGKGFAVIADEVRHLSVQTNDSSIHIS----K 447 Sbjct: 479 538 Query: 448 IISELQDSMAGFQKYMLGTKKNLEAQDHQVVETLASFEAIDESITGISRQIGQIHQKVEQ 507 Sbjct: 539 ---- 594 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 148/301 (49%), Gaps = 16/301 (5%) Query: 215 IRSFVSPVGKLQAALREIAEGDLRQQINSPYNDELGRLSHHFDHMVRRVRDMLRQTLNAA 274 IRS +P+ +L + + I+EGDL + I+ DELG L F++M +R ++ ++ Sbjct: 302 IRSITTPLKQLVGSSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSV 361 Query: 275 SSLADYSHSFQQSSTITAHTNQDILRTIQEISAGAEQQAVQSEQSTVLLQELERGVQEIT 334 ++A S S+ T+ + I I++ S G E+Q E + + ++ G+ + Sbjct: 362 DNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMA 421 Query: 335 D----YTDMMLSTSETANRNTRKGADTVTALREISRHSRDSITKVYEALETLVQQSGDIS 390 TD + ++E A+ + TV + I + +++ +V LET +S DI+ Sbjct: 422 QASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEA-EQVVRGLET---KSKDIT 477 Query: 391 RITNSITEISKQTNILSLNXXXXXXXXXXSGKGFAVIADEVRHLSVQTNDSSIHIS---- 446 I I I+ QTN+L+LN G+GF+V+A+EVR L+VQ+ DS+ I Sbjct: 478 NILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLII 537 Query: 447 KIISELQDSMAGFQKYMLGTKKNLEAQDHQVVETLASFEAIDESITGISRQIGQIHQKVE 506 +I+ E+ S+ FQ + L+ D +T SF+ I E I+ ++ + V+ Sbjct: 538 EIVKEINTSLGMFQSVNQEVQTGLDITD----KTEMSFKRISEMTNQIAGELQNMSATVQ 593 Query: 507 Q 507 Q Sbjct: 594 Q 594 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 153/307 (49%), Gaps = 9/307 (2%) Query: 221 PVGKLQAALREIAEGDLR-QQINSPYNDELGRLSHHFDHMVRRVRDMLRQTLNAASSLAD 279 P+ +L R +A+GDL +++ DE+G+L+ F+ M +R ++++ L A +A Sbjct: 6 PLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNADQVAV 65 Query: 280 YSHSFQQSSTITAHTNQDILRTIQEISAGAEQQAVQSEQSTVLLQELERGVQEITDYTDM 339 S S+ T+ + I+ IS GA+ Q ++ S L+E+ + V E+TD Sbjct: 66 SSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMTDGAKQ 125 Query: 340 MLSTSET----ANRNTRKGADTVTALREISRHSRDSITKVYEALETLVQQSGDISRITNS 395 + S + AN +TV ++ I +S+ +A++TL ++S DI I + Sbjct: 126 IESNANLTLTYANEGDTLVKETVENMQSID----ESVKGSDQAIQTLSKRSEDIVEILDV 181 Query: 396 ITEISKQTNILSLNXXXXXXXXXXSGKGFAVIADEVRHLSVQTNDSSIHISKIISELQDS 455 I I++QTN+L+LN GKGFAV+A+EVR L+ +++ S+ I +I E+ Sbjct: 182 IQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVKE 241 Query: 456 MAGFQKYMLGTKKNLEAQDHQVVETLASFEAIDESITGISRQIGQIHQKVEQTRHINSRL 515 + M K+ + +T F +I SI G++ Q+ +++ + ++ + Sbjct: 242 TNNSVEKMGLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTEV 301 Query: 516 AESVHSV 522 A SV ++ Sbjct: 302 ATSVQNM 308 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,443,350 Number of extensions: 1051150 Number of successful extensions: 5918 Number of sequences better than 1.0e-05: 799 Number of HSP's gapped: 4518 Number of HSP's successfully gapped: 800 Length of query: 527 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 416 Effective length of database: 25,576,357 Effective search space: 10639764512 Effective search space used: 10639764512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)