BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0011.p (195 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3118 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases 287 8e-78 BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases 266 2e-71 BS_clpP [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 266 2e-71 CAC2640 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 257 1e-68 lin2612 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 243 9e-65 >BH3118 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 194 Score = 287 bits (734), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 134/190 (70%), Positives = 157/190 (82%) Query: 6 IPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDIQMY 65 +PYVIEQ+ ERSYDIYSRLLKDRIVF+GAAIDDQ+ANSI+AQLLFL A+ P KDI +Y Sbjct: 5 VPYVIEQSGLSERSYDIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLY 64 Query: 66 INSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEIMIH 125 INSPGGST+AGF IYDTMQ +KP + TICT GKR+ALPNSEIMIH Sbjct: 65 INSPGGSTSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKGKRFALPNSEIMIH 124 Query: 126 QPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEALEY 185 QP GGAQGQASD+AI+A+RIL IREK+V +++ERTGQ EKVAKDMDRDYFMSA+EALEY Sbjct: 125 QPSGGAQGQASDLAITAKRILGIREKLVTVTSERTGQSPEKVAKDMDRDYFMSAEEALEY 184 Query: 186 GIIDKVITKL 195 GI+D++IT + Sbjct: 185 GIVDQIITSV 194 >BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 194 Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 126/190 (66%), Positives = 150/190 (78%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 M++IP VIEQT+RGER+YDIYSRLLKDRI+ +G AIDD +ANSI+AQLLFL A++PDKDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 +YINSPGGS TAG IYDTMQ IKP VSTIC GKR+ALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GG +GQASDI I RRIL++RE + +I AERTGQP E++AKD DRD FM+A++A Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180 Query: 183 LEYGIIDKVI 192 EYG+IDKVI Sbjct: 181 REYGLIDKVI 190 >BS_clpP [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 197 Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 123/191 (64%), Positives = 155/191 (81%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 M++IP VIEQT+RGER+YDIYSRLLKDRI+ +G+AIDD +ANSI++QLLFLAA++P+K+I Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEI 60 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 +YINSPGGS TAG IYDTMQ IKP+VSTIC GKRYALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GGAQGQA++I I+A+RIL +R+K+ ++ AERTGQP E + +D DRD F SA+EA Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180 Query: 183 LEYGIIDKVIT 193 LEYG+IDK++T Sbjct: 181 LEYGLIDKILT 191 >CAC2640 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 193 Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 119/192 (61%), Positives = 151/192 (78%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 MS++PYVIEQTSRGERSYDIYSRLLKDR++F+G ++D A+ ++AQLLFL +++PDKDI Sbjct: 1 MSLVPYVIEQTSRGERSYDIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDI 60 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 +YINSPGGS T+G IYDTMQ +KP VSTIC GKR+ALPNSEI Sbjct: 61 YLYINSPGGSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFLLTAGAPGKRFALPNSEI 120 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GG +GQA+DI I A+RIL+I++K+ I +ERTG+P E + KD DRD+F+SA+EA Sbjct: 121 MIHQPLGGFKGQATDIGIHAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEA 180 Query: 183 LEYGIIDKVITK 194 EYG+ID+VITK Sbjct: 181 KEYGLIDEVITK 192 >lin2612 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 198 Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 116/192 (60%), Positives = 146/192 (76%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 M++IP VIEQTSRGER+YDIYSRLLKDRI+ +G+AIDD +ANSI++QLLFL A +P+KDI Sbjct: 1 MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDI 60 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 +YINSPGGS +AG IYDTM +K V TI GKR+ALPN+EI Sbjct: 61 FLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEI 120 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GGAQGQA++I I+AR IL+I+E++ I AE+TGQP E +A+D DRD FM+AQEA Sbjct: 121 MIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEA 180 Query: 183 LEYGIIDKVITK 194 +YG+ID +I Sbjct: 181 KDYGLIDDIIVN 192 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,001,189 Number of extensions: 417527 Number of successful extensions: 915 Number of sequences better than 1.0e-05: 56 Number of HSP's gapped: 849 Number of HSP's successfully gapped: 56 Length of query: 195 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 94 Effective length of database: 26,729,697 Effective search space: 2512591518 Effective search space used: 2512591518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)