BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0016.p
         (151 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3507 [K] COG0789 Predicted transcriptional regulators               90   1e-18
HI0186 [K] COG0789 Predicted transcriptional regulators                74   1e-13
lin1622 [K] COG0789 Predicted transcriptional regulators               70   8e-13
L0246 [K] COG0789 Predicted transcriptional regulators                 68   6e-12
SP1856 [K] COG0789 Predicted transcriptional regulators                67   1e-11

>CAC3507 [K] COG0789 Predicted transcriptional regulators
          Length = 126

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 79/123 (64%), Gaps = 1/123 (0%)

Query: 15  GYSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMS 74
           G+SIK+ A+LTG++E T+R+YEK  L+    R  N +RIYSD DIE +  +  +K TGM 
Sbjct: 4   GFSIKEVAKLTGLSEHTLRFYEKQQLIKNISRDENGYRIYSDFDIEWIHFLIKVKNTGMP 63

Query: 75  LDDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKIDQNYLGPQE 134
           L++++ Y +L    N +  PE  +M+L H++++ ++I+ L+  +  ID K+D+ +   QE
Sbjct: 64  LNELQKYSELMAQGNPT-LPEREKMLLQHRKRVENEISDLEITLTKIDEKLDRYHHLMQE 122

Query: 135 CEL 137
             L
Sbjct: 123 LNL 125


>HI0186 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 5/112 (4%)

Query: 16  YSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSL 75
           Y+  + AE  GI+  T+R+Y+K GLLP   R    +R ++D D++ + L+ CLK TGMSL
Sbjct: 3   YTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSL 62

Query: 76  DDMRPYLDLSL--DSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKI 125
            D++ + + ++  D  + E   L E   N  + +  QIA L++ +DL++ K+
Sbjct: 63  KDIKRFAECTIIGDDTIEERLSLFE---NQTKNVKCQIAELKRYLDLLEYKL 111


>lin1622 [K] COG0789 Predicted transcriptional regulators
          Length = 145

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 67/111 (60%), Gaps = 1/111 (0%)

Query: 16  YSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSL 75
           Y   + AE  GIT  T+ YYEK GLLP  +R    +RIY++ +IE + +I  +++ G+ +
Sbjct: 3   YIAHEVAEKLGITVPTLHYYEKAGLLPSIKRNSVGNRIYTEENIEWLYMIVLMREVGVPI 62

Query: 76  DDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKID 126
            ++R Y+ L L    +  PE ++++  +KQ + +++ ++Q  +  + +K++
Sbjct: 63  REIRSYIQLLLKGPET-IPERYQLVTQYKQSVEEKMKAMQTSLKWLGAKVN 112


>L0246 [K] COG0789 Predicted transcriptional regulators
          Length = 134

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 17  SIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSLD 76
           +IK+ AEL+GI  D IRYYE+IGL+P+  R  +  R +++ +I T+K +  ++  G+ ++
Sbjct: 2   NIKKAAELSGIKTDNIRYYERIGLIPKITRTESGIRNFTEANIRTLKFVKHMRDAGVQVE 61

Query: 77  DMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKIDQNY---LGPQ 133
            +  Y+ L  + N     E  E++ N  +++  +I   Q  +D +  KI+ NY   + P 
Sbjct: 62  PLTRYMALVNEGNPETKEERIEILKNQVEQLRTEIIEKQSALDYLTFKIE-NYDEVMLPN 120

Query: 134 ECELTVGQKK 143
           E  L    K+
Sbjct: 121 EINLNQSSKE 130


>SP1856 [K] COG0789 Predicted transcriptional regulators
          Length = 117

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%)

Query: 17 SIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSLD 76
          +IK  ++L GI+ DTIRYYE++GL+P   R     R + D DIE ++ I C +  G+S+D
Sbjct: 2  NIKSASDLLGISADTIRYYERVGLVPPITRTATGIRDFQDQDIEALEFIKCFRSAGVSVD 61

Query: 77 DMRPYLDL 84
           +  Y+ L
Sbjct: 62 SLVDYMSL 69


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,740,106
Number of extensions: 415469
Number of successful extensions: 1136
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 58
Length of query: 151
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 54
Effective length of database: 27,191,033
Effective search space: 1468315782
Effective search space used: 1468315782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)