BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0565.0007.p (581 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2817 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 601 e-171 BS_yqhH [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 577 e-164 BH0969 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 386 e-107 all7172 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 152 1e-36 SPAC15A10.03c [KL] COG0553 Superfamily II DNA/RNA helicases, SNF... 145 1e-34 >BH2817 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 566 Score = 601 bits (1549), Expect = e-171, Method: Compositional matrix adjust. Identities = 283/553 (51%), Positives = 391/553 (70%), Gaps = 7/553 (1%) Query: 20 LPVPLSFERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGLSP 79 + + + + +W + RL+ GGPW +W + +LA E ++ F LQ KHL L P Sbjct: 1 MDIQIQYSTDWKEEFLKRLEDGGPWSNWEMGKLAYEAANYQVIPEFHGLQAPKHLPQLQP 60 Query: 80 LPHQLDTAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLVLQ 139 PHQ++ A V+ QM+G+AILADEVGLGKTIEAGL+LKEY++RGL +VLILVPASLV Q Sbjct: 61 FPHQMEVAQTVIEQMNGKAILADEVGLGKTIEAGLILKEYMIRGLAKKVLILVPASLVSQ 120 Query: 140 WVRELNTKFGISAVAQKKSYSWSN-DIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHKL 198 W EL++KF I A+ QKK+Y W D+VVAS+DTAKR PH++++LN YD+++IDEAHKL Sbjct: 121 WAYELSSKFYIPAIPQKKAYVWEQYDVVVASIDTAKRQPHRDIVLNQHYDLVIIDEAHKL 180 Query: 199 KNKKSSNYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDK 258 KN K+ NY F++ L++KYCLLLTATPVQN L E+FNL++LLKPG LG+ F + +K Sbjct: 181 KNPKTKNYAFIKSLKRKYCLLLTATPVQNKLEEIFNLVSLLKPGHLGDLESFEKEYRANK 240 Query: 259 RQPKNEVQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQY 318 R PKNE +L++ ++KVM+RNRR E + +TKR V+ +P+T S E+ Y +T Sbjct: 241 RAPKNEDKLKELVNKVMVRNRREETGIEWTKRIVQTVPITFSEGERAFYHAITKL----- 295 Query: 319 QEAGGNLSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSPKRDRMMELLQTIRTVKT 378 ++ +++ SL+TLQRE+CSSR+A F+TL N+I KL + + L++ + T++ Sbjct: 296 KQQPDVMTNSFSLLTLQREICSSREAAFMTLKNMITKLEQEGRTSPILESLIEQVGTIEG 355 Query: 379 NTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWMMDL 438 + KAEK +ELI+++N+KVI+FTEYRATQ YL Y + HG+ V + GG RGKKDWM L Sbjct: 356 HAKAEKALELIQQINDKVIIFTEYRATQLYLQWYLKQHGISSVPFRGGFKRGKKDWMRQL 415 Query: 439 FRGRAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIYNLS 498 F RAQV+IATEAGGEGINLQFCHH+IN+DLPWNPMR+EQRIGR+HRLGQ DV IYN + Sbjct: 416 FENRAQVLIATEAGGEGINLQFCHHIINYDLPWNPMRIEQRIGRIHRLGQTEDVRIYNFA 475 Query: 499 TEGTIEEHILHLLHEKINMFEMVIGGLDVILERFXXXXXXXXXXYKIMLEARSDEELRSG 558 + TIEE IL LL+EKI +FE V+G LD IL + I + + S+ E++ Sbjct: 476 VKDTIEEQILTLLYEKIQLFERVVGELDDILTKMNVGSIEEHIR-DIFVHSDSEGEMKIK 534 Query: 559 VDHIGDSLSELTH 571 +DH+ ++++ + Sbjct: 535 LDHLSAIMNDVAN 547 >BS_yqhH [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 85 Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust. Identities = 0/545 (0%), Positives = 0/545 (0%), Gaps = 9/545 (1%) Query: 26 FERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGLSPLPHQLD 85 L + S + K + + + + S Sbjct: 7 VGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANT 66 Query: 86 TAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLVLQWVRELN 145 Sbjct: 67 126 Query: 146 TKFGISAVAQKKSYSWSN-DIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHKLKNKKSS 204 Sbjct: 127 186 Query: 205 NYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDKRQPKNE 264 Sbjct: 187 246 Query: 265 VQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQYQEAGGN 324 Sbjct: 247 ----- 301 Query: 325 LSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSPK--RDRMMELLQTIRTVKTNTKA 382 Sbjct: 302 361 Query: 383 EKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWMMDLFRGR 442 Sbjct: 362 421 Query: 443 AQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIYNLSTEGT 502 Sbjct: 422 481 Query: 503 IEEHILHLLHEKINMFEMVIGGLDVILERFXXXXXXXXXXYKIMLEARSDEELRSGVDHI 562 Sbjct: 482 - 540 Query: 563 GDSLS 567 Sbjct: 541 545 >BH0969 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 577 Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/531 (41%), Positives = 326/531 (61%), Gaps = 18/531 (3%) Query: 51 RLAVEGEKSGLVTSFDELQCMKHLSGLSPLPHQLDTAHKVLFQMSGRAILADEVGLGKTI 110 +L ++ + L FD L C+ + L P P Q +TA KVL M G AILADEVGLGKTI Sbjct: 25 KLKLQSQAIQLQKGFDRLICLDEVY-LEPRPWQYETAIKVLRDMQGSAILADEVGLGKTI 83 Query: 111 EAGLVLKEYLVRGLVARVLILVPASLVLQWVRELNTKFGISAVAQKKSYSWSNDIVVASM 170 EAGL++KE LVRGL+ VLILVPA LV QW E+N KF I K+ +++++SM Sbjct: 84 EAGLIIKELLVRGLINSVLILVPAPLVEQWRDEMNDKFKIQLTDLKEEGWEEQNLLISSM 143 Query: 171 DTAKRDPHKEMLLNNE-YDMLVIDEAHKLKNKKSSNYLFVQQLRKKYCLLLTATPVQNDL 229 R ++ ++N +D+LV+DEAH LKN ++ Y FV ++K LL++ATP+QND+ Sbjct: 144 PYLVRSKKRQEIINKRTFDLLVVDEAHCLKNHRTQTYKFVYTIQKNNTLLMSATPIQNDM 203 Query: 230 GELFNLITLLKPGQLGNQGDFATNFVVDKRQPKNEVQLRDELSKVMIRNRRGEGPVTFTK 289 ELFNL+ +LKPG L ++ F F+V++ PKN LRD L+KVMIR+RR + V + Sbjct: 204 RELFNLVNILKPGFLKSRKKFREQFIVNRYTPKNIEALRDLLNKVMIRHRRSDTLVELPR 263 Query: 290 RKVRNIPLTLSPEEKVLYDGVTAFVKDQYQE-AGGNLS----------SMLSLVTLQREV 338 R +RN+ + L+ E+ ++GV F +D Y++ G++ +L L++L ++ Sbjct: 264 RVIRNVEIELTEIERNFHNGVIDFCRDTYKKYMEGDIQIGWDKTRVHLIVLILLSLLKQN 323 Query: 339 CSSRDAVFITLVNLIKKLPA-DSPKRDRMMELLQTIRTVKTNTKAEKTMELIREMNEKVI 397 CSS A TL K P D + ++L+Q + +KA + ++L+++ +E+ I Sbjct: 324 CSSPQASLSTLRT--KMFPRLDGVDKKNCLDLIQLGERITAPSKAIELLKLLKQSDEQAI 381 Query: 398 VFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWMMDLFRGR-AQVMIATEAGGEGI 456 V++EYR T + L + +H TY G ++ +K ++ F+ + AQV I++E+GG+G+ Sbjct: 382 VYSEYRVTIDLLSELLEEHDFTVTTYHGRLSSREKQQSIERFKNKEAQVFISSESGGQGL 441 Query: 457 NLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIYNLSTEGTIEEHILHLLHEKIN 516 NLQFC +INFDLPWNPMR+EQRIGRVHR GQ NDV IY + T+G I+E++L+ L K+N Sbjct: 442 NLQFCRRLINFDLPWNPMRIEQRIGRVHRFGQVNDVEIYTMPTKGAIDEYLLYTLTSKVN 501 Query: 517 MFEMVIGGLDVILERFXXXXXXXXXXY-KIMLEARSDEELRSGVDHIGDSL 566 +FE+VIG LD IL KI+LE+++ E+ + I D Sbjct: 502 LFEVVIGELDTILSYMKNNDESFELRIGKIILESKNSAEVEEQLRSISDEF 552 >all7172 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1055 Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 227/453 (50%), Gaps = 52/453 (11%) Query: 100 LADEVGLGKTIEA-GLVLKEYLVRGLVARVLILVPASLVLQWVRELNTKFG--------- 149 LAD++GLGK+++ +++E + L++ P S+V W RE+ KF Sbjct: 601 LADDMGLGKSVQVIARLVQEKDSQSSPLPTLLIAPTSVVGNWQREI-AKFAPHLKTMVHH 659 Query: 150 ----ISAVAQKKSYSWSNDIVVASMDTAKRDPHKEMLLNN-EYDMLVIDEAHKLKNKKSS 204 + A+ KS +D+V++S A+ D E LLN+ + LV+DEA +KN K++ Sbjct: 660 GSDRLQDAAEFKSACQQHDVVISSFTLARLD---EKLLNSVTWQRLVLDEAQNIKNPKAA 716 Query: 205 NYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDKRQPKNE 264 + +L K+ L LT TPV+N L +L+++ L PG LG + F +F + ++ ++ Sbjct: 717 QTKAILKLSAKHRLALTGTPVENRLLDLWSIFNFLNPGYLGKEAQFRKSFEIPIQKDNDK 776 Query: 265 VQ---LRDELSKVMIRNRRGEGPVT--FTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQYQ 319 V+ L+ + +++R + + + + + + L+ E+ LY+ V V+++ Q Sbjct: 777 VKSTTLKKLVEPLILRRVKTDQSIIKDLPDKVEQKLYTNLTKEQASLYEVVVRDVEEKLQ 836 Query: 320 EAGGNLSSMLSLVTLQ--REVCSSRDAVFITLVNLIKKLPADSPKRDRMMELLQTIRTVK 377 EA G L L TL +++C+ L + + LP S K R++E++ Sbjct: 837 EAEGIQRKGLILSTLMKLKQICNHPRQF---LQDNSEFLPERSHKLSRLVEMVD------ 887 Query: 378 TNTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTY--SGGMNRGKKDWM 435 E I E E +++F+++ E + +Y + H L C TY GG +R +++ M Sbjct: 888 ---------EAISE-GESLLIFSQFTEVCEQIEKYLK-HNLHCNTYYLHGGTSRQRREQM 936 Query: 436 MDLFRG---RAQVMI-ATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQEND 491 + F+ A V + + +AGG GI L +H+ +FD WNP +Q R R+GQ+ + Sbjct: 937 ISDFQNPDTEASVFVLSLKAGGVGITLTKANHVFHFDRWWNPAVEDQATDRAFRIGQKKN 996 Query: 492 VVIYNLSTEGTIEEHILHLLHEKINMFEMVIGG 524 V ++ GT+EE I ++ +K + V+G Sbjct: 997 VFVHKFVALGTLEERIDQMIEDKKKLSSAVVGS 1029 >SPAC15A10.03c [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 852 Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 134/515 (26%), Positives = 232/515 (45%), Gaps = 93/515 (18%) Query: 81 PHQLDTAHKVLFQMSGR-------AILADEVGLGKTIEAGLVLKEYLVRG------LVAR 127 PHQ++ + ++GR I+ADE+GLGKT++ +L L + + + Sbjct: 266 PHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEK 325 Query: 128 VLILVPASLVLQWVRELNTKFGISAVAQ-----KKS--------YSWSN--------DIV 166 +I P+SLV W EL G A+ K S W++ ++ Sbjct: 326 AIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRPVL 385 Query: 167 VASMDTAKRDPHKEMLLNNEYDMLVIDEAHKLKNKKSSNYLFVQQLRKKYCLLLTATPVQ 226 +AS +T + + E L N E ML+ DE H+LKN S + + +L + ++L+ TP+Q Sbjct: 386 IASYETLRS--YVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQ 443 Query: 227 NDLGELFNLITLLKPGQLGNQGDFATNFVV-----------DKRQPKNEVQLRDELSKVM 275 NDL E F+L+ PG LG++ +F N+ + +K + + +L EL+K++ Sbjct: 444 NDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLA-ELAKIV 502 Query: 276 IRNRRGEGPVTFTKRKVRNIPLTLSP--EEKVLYDGVTAFVKDQYQE----------AGG 323 R F R+ +I P E V++ ++ F Y+ G Sbjct: 503 NR---------FIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRG 553 Query: 324 NLSSMLSLVTLQREVCSSRDAVFITLVNLIKKL--------PADSPK----RDRMMELLQ 371 S L + L +++C+ D L+NL + L P P+ RDR ++ Sbjct: 554 TGSQPLKAIGLLKKICNHPD-----LLNLTEDLEGCEALFPPGFIPRELRGRDRNID--- 605 Query: 372 TIRTVKTNTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGK 431 + + K ++ +E ++K+++ + Y +T + Q R G + + G MN K Sbjct: 606 SSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNK 665 Query: 432 KDWMMDLFRGRAQ----VMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLG 487 + ++D F + +++++AGG GINL + +I FD WNP +Q + RV R G Sbjct: 666 RQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDG 725 Query: 488 QENDVVIYNLSTEGTIEEHILHLLHEKINMFEMVI 522 Q+ D +Y GTIEE I K ++ V+ Sbjct: 726 QKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVV 760 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,250,455 Number of extensions: 1704305 Number of successful extensions: 3598 Number of sequences better than 1.0e-05: 109 Number of HSP's gapped: 3485 Number of HSP's successfully gapped: 132 Length of query: 581 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 469 Effective length of database: 25,461,023 Effective search space: 11941219787 Effective search space used: 11941219787 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 119 (50.4 bits)