BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0004.p
         (195 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA0839 [L] COG3335 Transposase and inactivated derivatives             61   1e-09
MA2937 [L] COG3335 Transposase and inactivated derivatives             50   3e-06
all7564 [L] COG3335 Transposase and inactivated derivatives            49   5e-06

>MA0839 [L] COG3335 Transposase and inactivated derivatives
          Length = 159

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 11  LTQEEGNRLKRIARKGADPVQ-VRRALLILASAQKMKVPEISRLYHISGEHIRHTIHRFN 69
           LT EE   L++++   ++P   V+RA ++L S + +   EISR  +++   +R  I R  
Sbjct: 12  LTHEEIKYLEKLSHSRSEPASLVQRAKIVLLSFEGINDTEISRQLNVAYNTVRSRIQRVL 71

Query: 70  QEG-LPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVEERKI 128
             G +  LK K   GRP T T E R  +I++A + PK  GYP   W+   L + V+E  I
Sbjct: 72  DFGVIEGLKDKTGAGRPRTITDESRVWLIKVACMKPKDFGYPHEIWTQRLLTKYVQENCI 131


>MA2937 [L] COG3335 Transposase and inactivated derivatives
          Length = 164

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 11  LTQEEGNRLKRIARKG-ADPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHTIHRFN 69
           L   E N L    RKG  +  ++ RA ++L S Q+  V EI+    +S     +   R+ 
Sbjct: 27  LEDNEANFLHNFVRKGHKNARELTRASILLLSNQQKGVTEITETLDVSRNTTLNIRKRYL 86

Query: 70  QEGLPS-LKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTN--WSLSKLKQAVEER 126
           +EGLPS L  K   G+   +T +  +E+I LA      +  P  +  WSLS L + + ++
Sbjct: 87  EEGLPSALSDKPRSGQSVKYTEKHVAEVIALA-----CSSSPDGSKRWSLSLLTEELRKK 141

Query: 127 KIVSSISIEMLRVILGEAKI 146
           +   +I  E +R+IL +AK+
Sbjct: 142 EGFKTIGKESVRLILKKAKL 161


>all7564 [L] COG3335 Transposase and inactivated derivatives
          Length = 189

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 1   VSGMTIFVRDLTQEEGNRLKRIARKGADPVQVR-RALLILASAQKMKVPEISRLYHISGE 59
           ++ +T  + +L+  E ++L+++  +   P Q+  RA +IL +++     EI+R   ++ +
Sbjct: 1   MARLTPKILNLSDGERDQLQKLINRHNTPQQIALRAKIILMASEGQNHREIARNLDVNRQ 60

Query: 60  HIRHTIHRF-NQEGLPSL------KPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFT 112
             R   +R+   EG   L        +  G RP  F+ E+  E+  LA  PP   G P +
Sbjct: 61  TARLWRNRWLETEGKELLIEQRLQDSERVGARP-KFSMEQVIELFALACSPPSDYGRPIS 119

Query: 113 NWSLSKLKQAVEERKIVSSISIEMLRVILGEAKITYQNTKTW 154
           +W++ +L   + ++ I+ SISI  L  +L EA++    ++ W
Sbjct: 120 HWTVRELTDEIIKQGIIESISIRHLGRLLEEAELKPHQSRYW 161


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,108,487
Number of extensions: 651432
Number of successful extensions: 846
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 3
Length of query: 195
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 94
Effective length of database: 26,729,697
Effective search space: 2512591518
Effective search space used: 2512591518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)