BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0001.p
         (151 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0454 [V] COG0577 ABC-type antimicrobial peptide transport sys...    88   6e-18
Cgl2500 [V] COG0577 ABC-type antimicrobial peptide transport sys...    72   3e-13
Cgl0401 [V] COG0577 ABC-type antimicrobial peptide transport sys...    61   6e-10
SMb20369 [M] COG4591 ABC-type transport system, involved in lipo...    53   2e-07
BS_ytrF [V] COG0577 ABC-type antimicrobial peptide transport sys...    50   1e-06

>CAC0454 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 0/129 (0%), Positives = 0/129 (0%), Gaps = 2/129 (1%)

Query: 20  IFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGLF 79
                                                                       
Sbjct: 703                                                              762

Query: 80  SAVIGIILGTALDYGIHLLFMGALDADWVFPWYSIGIAFAGSMITXXXXLATIGPMYRLN 139
                                                                       
Sbjct: 763 --                                                           820

Query: 140 KVSIVDALR 148
                    
Sbjct: 821           829


>Cgl2500 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 0/127 (0%), Positives = 0/127 (0%), Gaps = 3/127 (2%)

Query: 22  FYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGLFSA 81
                                                                       
Sbjct: 727                                                              786

Query: 82  VIGIILGTALDYGIHLLFMG-ALDADWVFPWYSIGIAFAGSMITXXXXLATIGPMYRLNK 140
                                                                       
Sbjct: 787 --                                                           844

Query: 141 VSIVDAL 147
                  
Sbjct: 845         851


>Cgl0401 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 0/94 (0%), Positives = 0/94 (0%)

Query: 23  YGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGLFSAV 82
                                                                       
Sbjct: 733                                                              792

Query: 83  IGIILGTALDYGIHLLFMGALDADWVFPWYSIGI 116
                                             
Sbjct: 793                                    826


>SMb20369 [M] COG4591 ABC-type transport system, involved in lipoprotein
           release, permease component
          Length = 413

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 19  SIFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGL 78
           ++  Y  +  I+L+A   I N VST    +  + A +K++G +Q ++R++ ++EG+  G+
Sbjct: 276 NVIMYTVVAAIMLVAGFGIFNIVSTITHEKARDIAIMKSLGFSQADMRRLFVMEGLAIGI 335

Query: 79  FSAVIGIILGTALDYGIHLLF---------MGALDADWVFPWYSIGIAFAGSMITXXXXL 129
             +++G  LG A+ Y +  +          M  L   W    Y++  AFA S       L
Sbjct: 336 AGSLLGWALGFAITYALSRVRFEIAATGQEMTRLPIAWSILHYAVATAFALSSAAVAGYL 395

Query: 130 ATIGPMYRLNKVSIVDALR 148
               P  R  +V+ VD +R
Sbjct: 396 ----PARRAARVNPVDIIR 410


>BS_ytrF [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/144 (0%), Positives = 0/144 (0%), Gaps = 13/144 (9%)

Query: 18  FSIFFYG--FIGVI-VLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGV 74
                                                                       
Sbjct: 290                                                              349

Query: 75  FYGLFSAVIGIILGTALDYGIHL---LFMGAL------DADWVFPWYSIGIAFAGSMIT- 124
                                                                       
Sbjct: 350                                                              409

Query: 125 XXXXLATIGPMYRLNKVSIVDALR 148
                                   
Sbjct: 410                          433


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.330    0.145    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,797,698
Number of extensions: 350919
Number of successful extensions: 1688
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1692
Number of HSP's successfully gapped: 22
Length of query: 151
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 54
Effective length of database: 27,191,033
Effective search space: 1468315782
Effective search space used: 1468315782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)