BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0085.p (1048 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA2013_2 [T] COG0642 Signal transduction histidine kinase 216 2e-55 PA0928_1 [T] COG0642 Signal transduction histidine kinase 202 2e-51 ZbarA_1 [T] COG0642 Signal transduction histidine kinase 202 3e-51 barA_1 [T] COG0642 Signal transduction histidine kinase 202 3e-51 ZbarA_1 [T] COG0642 Signal transduction histidine kinase 202 3e-51 >MA2013_2 [T] COG0642 Signal transduction histidine kinase Length = 296 Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 172/273 (63%), Gaps = 13/273 (4%) Query: 622 EQEIIRAKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXX 681 E+++++AKE+AE A++AK +FLA MSHE+RTPMN ++GM ++L ET L +EQR Y + Sbjct: 4 EEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSLTDEQREYLQLAH 63 Query: 682 XXXXXXXXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIA 741 +++LDFSKIE K+ L +ES++ + L S KA K + L+ I Sbjct: 64 ASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIE 123 Query: 742 EDVPELIMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAK-----------KL 790 +D+P +GD RL+QVL N++ NA+KFT++G++++ VE + P+ + ++ Sbjct: 124 KDLPSTFIGDPVRLKQVLFNILGNAIKFTKKGEIALSVEV-YMPSERNSGLSNSDFPEEV 182 Query: 791 SLKFSVHDTGIGIPSEKQPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVE 850 +L F V DTGIGIP EK Q+F F Q S+ R+YGGTGLGLAI +LVELM G I VE Sbjct: 183 ALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISSQLVELMEGRIWVE 242 Query: 851 SVEGKGSKFFFTLPVDPGGEWEENGAEDHELAE 883 S GKG F+FT+ V GE EN + + + E Sbjct: 243 SEVGKGCTFYFTVRVKR-GESSENYGQGNNIPE 274 >PA0928_1 [T] COG0642 Signal transduction histidine kinase Length = 509 Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 155/242 (64%), Gaps = 1/242 (0%) Query: 624 EIIRAKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXX 683 E+ A++ A +A + KSEFLA MSHE+RTP+NGI+G T+LL +++L+ Q+ Y Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKS 328 Query: 684 XXXXXXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAED 743 NEILDFSKIEAGK+ L + P ++ ++ + +P A EK + L S + D Sbjct: 329 AESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRD 388 Query: 744 VPELIMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGI 803 P + GD RL+Q+L NLV NA+KFT+ G V++ E + + L+ SV DTGIG+ Sbjct: 389 TPIQLQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLE-DESDDRAQLRISVQDTGIGL 447 Query: 804 PSEKQPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTL 863 E Q LF++FSQ S++R+ GGTGLGL I KRL+E MGG IGV+S G+G++F+ +L Sbjct: 448 SEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISL 507 Query: 864 PV 865 + Sbjct: 508 SL 509 >ZbarA_1 [T] COG0642 Signal transduction histidine kinase Length = 525 Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 628 AKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXX 687 AK+ A++A + KSEFLA MSHELRTP+NG+IG T L +T+L QR + Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNL 341 Query: 688 XXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPEL 747 N++LDFSK+EAGK+ L P + S + V L + + +K + L+ I DVP+ Sbjct: 342 LAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDN 401 Query: 748 IMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEK 807 ++GD RL+Q++ NLV NA+KFTE G + I VE N K+ ++ + DTGIGIP Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNT-KVQIEVQIRDTGIGIPERD 460 Query: 808 QPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTLPVD 866 Q +LFQ+F Q SI+R++GGTGLGL I ++LV MGG I S +GS F+F + +D Sbjct: 461 QSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLD 519 >barA_1 [T] COG0642 Signal transduction histidine kinase Length = 525 Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 628 AKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXX 687 AK+ A++A + KSEFLA MSHELRTP+NG+IG T L +T+L QR + Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNL 341 Query: 688 XXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPEL 747 N++LDFSK+EAGK+ L P + S + V L + + +K + L+ I DVP+ Sbjct: 342 LAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDN 401 Query: 748 IMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEK 807 ++GD RL+Q++ NLV NA+KFTE G + I VE N K+ ++ + DTGIGIP Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNT-KVQIEVQIRDTGIGIPERD 460 Query: 808 QPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTLPVD 866 Q +LFQ+F Q SI+R++GGTGLGL I ++LV MGG I S +GS F+F + +D Sbjct: 461 QSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLD 519 Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 1/239 (0%) Query: 628 AKESAEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXX 687 AK+ A++A + KSEFLA MSHELRTP+NG+IG T L +T+L QR + Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNL 341 Query: 688 XXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPEL 747 N++LDFSK+EAGK+ L P + S + V L + + +K + L+ I DVP+ Sbjct: 342 LAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDN 401 Query: 748 IMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEK 807 ++GD RL+Q++ NLV NA+KFTE G + I VE N K+ ++ + DTGIGIP Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNT-KVQIEVQIRDTGIGIPERD 460 Query: 808 QPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTLPVD 866 Q +LFQ+F Q SI+R++GGTGLGL I ++LV MGG I S +GS F+F + +D Sbjct: 461 QSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLD 519 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 76,059,712 Number of extensions: 3290511 Number of successful extensions: 9227 Number of sequences better than 1.0e-05: 481 Number of HSP's gapped: 8791 Number of HSP's successfully gapped: 520 Length of query: 1048 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 931 Effective length of database: 24,884,353 Effective search space: 23167332643 Effective search space used: 23167332643 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)