BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0082.p
         (106 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0254 [E] COG0347 Nitrogen regulatory protein PII                   138   2e-33
MA1212 [E] COG0347 Nitrogen regulatory protein PII                    105   2e-23
MTH1561 [E] COG0347 Nitrogen regulatory protein PII                   104   4e-23
MA1214 [E] COG0347 Nitrogen regulatory protein PII                    104   4e-23
MA3896 [E] COG0347 Nitrogen regulatory protein PII                    103   5e-23

>CAC0254 [E] COG0347 Nitrogen regulatory protein PII
          Length = 108

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 93/106 (87%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MIKAI+RP+K   V++EL  AGFP+++K  ++GRGKQ+G++VG  +Y++I K++L+IV+N
Sbjct: 3   MIKAILRPQKVTNVLSELSDAGFPAVTKFSVVGRGKQRGVKVGDIYYDEIPKEMLLIVVN 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D++K+DV++II + A+TGE+G+FGDGKIF++PV++AYTIS+GK+ L
Sbjct: 63  DEDKDDVVNIIAKNAKTGEKGAFGDGKIFIVPVEQAYTISSGKAGL 108


>MA1212 [E] COG0347 Nitrogen regulatory protein PII
          Length = 105

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 3/106 (2%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MIKAI+RPE AD V+  L  AGF S++K+D+ GRGKQKGI VG  HY+++ K ++M+V+ 
Sbjct: 3   MIKAIIRPEAADDVIDGLEGAGFFSLTKIDVFGRGKQKGITVGIIHYDELPKTVIMLVVE 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D   E+V  +I   A T   G+ GDGKIF+ PV +AYTI  G S L
Sbjct: 63  DKSVEEVAKLIKYKAYT---GNCGDGKIFITPVDDAYTIRTGVSGL 105


>MTH1561 [E] COG0347 Nitrogen regulatory protein PII
          Length = 268

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 6/106 (5%), Positives = 24/106 (22%), Gaps = 3/106 (2%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           +   I     A+    ++       I++   +   K+  I            + ++  ++
Sbjct: 6   LSIFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMD 65

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
             +        +               +          ++    Q 
Sbjct: 66  TPQYLRRKVFPIMRELK---HVGILPPLRTPHHPTGKPVTGEYRQG 108


>MA1214 [E] COG0347 Nitrogen regulatory protein PII
          Length = 105

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 3/106 (2%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MI+AI+RPE  + V   L  AG+ S++K+++ GRGKQKGI VG  HY+++SK ++M+ + 
Sbjct: 3   MIRAILRPEWTEEVTDGLSEAGYYSLTKINVFGRGKQKGITVGDMHYDELSKTMIMMAVE 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D+  E+VI II   A T   GS GDGKIFV P+ +AYTIS+G   L
Sbjct: 63  DEAVEEVIKIISGKAYT---GSMGDGKIFVSPIDDAYTISSGAKGL 105


>MA3896 [E] COG0347 Nitrogen regulatory protein PII
          Length = 108

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 73/106 (68%), Gaps = 3/106 (2%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MI+A++RP     V+  L   G  S++KM++ GRGKQKGI +   HY+++ K +L++V+ 
Sbjct: 6   MIRAVIRPGMESKVVECLEKEGCISLTKMEVFGRGKQKGIHIADIHYDELQKTMLLMVVE 65

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D+ K+ VI  IM  ARTG+   +GDG+IFV PV+EAYTI  GK+ L
Sbjct: 66  DEHKDKVIKTIMEAARTGK---YGDGRIFVNPVEEAYTIRTGKAGL 108


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.136    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,412,951
Number of extensions: 243443
Number of successful extensions: 722
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 55
Length of query: 106
Length of database: 38,378,431
Length adjustment: 74
Effective length of query: 32
Effective length of database: 29,843,715
Effective search space: 954998880
Effective search space used: 954998880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)