BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0081.p
         (416 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1096 [S] COG2733 Predicted membrane protein                        120   4e-27
CAC1095 [S] COG2733 Predicted membrane protein                         75   2e-13

>CAC1096 [S] COG2733 Predicted membrane protein
          Length = 425

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 193/427 (45%), Gaps = 30/427 (7%)

Query: 4   MKSRNLATISLAIMAC----GFLITLFLPENLAVVLLRGGFEAGLVGGIADWFAVTALFR 59
           M  +N A + L I++      F++  ++  N     +    +A LVGGIADWFA+TA++R
Sbjct: 1   MNYKNKANVILGIVSAFFIFSFILKYYIVNNAYTDFIFTVIKAALVGGIADWFAITAIYR 60

Query: 60  HPLGLPIPHTSLLLKNRDKIIQSLISAMENELLNKASIENKLRKIRIVSLGSTMLTRLFA 119
            PLG+   HT+L+ +NR KII++    +ENELL+K +I++K+ K  I +  S  +     
Sbjct: 61  KPLGISF-HTALIPRNRKKIIEATAVFVENELLSKEAIKSKMEKNNIANKISENIIN--N 117

Query: 120 RKKARAEMLEQVSAFVQKLPVEQAVPYIQSVAAGYIREAKLGTAVDTIVTKLMN-DGKDV 178
           +     + ++ ++ + +KL  ++    ++ +   Y++E      +  +++ + N DG+ +
Sbjct: 118 KDSINIKTIKLLNEYAEKLDRDKVKEKVKKLKTKYLQEFYDEKRIKCVLSCIYNKDGEKI 177

Query: 179 AALDFALEGISGWVERPETRAMLGKIASEKLAEVKLGGLKGMAFQAF--VGFVDAEMLGG 236
             LD   + +   V++ E +  + ++ ++   E   G +  +    F     V+      
Sbjct: 178 --LDDIFDFLINSVKKHEVQEYIYEVMAKLKEENTRGFIARIGISIFEASDSVNLREASR 235

Query: 237 MLQGMVQSGINDFRSEDSPYXXXXXXXXXVAIFQMVNDEARIAAIKEWGLNELQSEAAAS 296
           +    +  G+   ++    Y         + +  + + + ++   K +            
Sbjct: 236 IFHDELLKGVRKLKNPKDYYRNKINTEIKLYLDNLDSQDNKLEKFKNY-----------I 284

Query: 297 FLREQLEHFRGKAVAW-------LEEERSAGGRKLFGLYAMLARRIGKXXXXXXXXXXXX 349
           F  E +E F  K            E E     + LF L++ +   +              
Sbjct: 285 FKDENIEKFVDKMFTKSKIVFKDYETEGYFVSKVLFKLFSDVFEEVVSDNEKLSKLCERV 344

Query: 350 XASLISFVEANHYRVGLLVKENLDLMDDASLVNMLEDKVGKDLQWIRVNGAVCGFVVGLV 409
             + +  +E  HY +G  +++ L+  DD  L   ++DKVG DLQWIR+NG+V G  VG++
Sbjct: 345 EKAAVDILEEKHYIIGKFIRDTLNEFDDKKLNEFIDDKVGSDLQWIRINGSVVGGFVGML 404

Query: 410 LTVFQLF 416
           L V   F
Sbjct: 405 LFVIMKF 411


>CAC1095 [S] COG2733 Predicted membrane protein
          Length = 386

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 10  ATISLAIMACGFLITLFLPENLAVVLLRGGFEAGLVGGIADWFAVTALFRHPLGLPIP-- 67
           AT+ LAI A G+ I+     N    L+    EA LVGGIADWF VTA+F+ P  +  P  
Sbjct: 9   ATMLLAIFAGGYFISSAFRSNFYGGLMESICEAALVGGIADWFGVTAIFKKPFNINWPKR 68

Query: 68  --HTSLLLKNRDKIIQSLISAMENELLNKASIENKLR 102
              T +L +N++K I +++  ++N+LL++  I NK++
Sbjct: 69  IFRTDILRENKEKFIFTIVDMVQNDLLSREKINNKIK 105



 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 39/54 (72%)

Query: 357 VEANHYRVGLLVKENLDLMDDASLVNMLEDKVGKDLQWIRVNGAVCGFVVGLVL 410
           +++ H  +G LVKE+L+  +D  ++N+  DK G +LQ IR+NG+V G +VG+++
Sbjct: 325 LDSKHKEIGELVKESLNKYNDEEIINLAYDKAGDELQLIRINGSVVGGIVGMLV 378


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 26,561,762
Number of extensions: 983983
Number of successful extensions: 3140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3138
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 38,378,431
Length adjustment: 109
Effective length of query: 307
Effective length of database: 25,807,025
Effective search space: 7922756675
Effective search space used: 7922756675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)