BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0072.p
         (319 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5120 [R] COG1524 Uncharacterized proteins of the AP superfamily    121   1e-27
YKL165c [R] COG1524 Uncharacterized proteins of the AP superfamily     52   1e-06

>mll5120 [R] COG1524 Uncharacterized proteins of the AP superfamily
          Length = 298

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 119/262 (45%), Gaps = 10/262 (3%)

Query: 40  DGLRYDAARKYLGYMEHLVEQGQLSCYKVQSELPSLSRPLYEVLLTGTPVSRNGITANHI 99
           DG+ Y   R+ +G +E  V+ G+   +K++S LPS S   Y  + TG     +GI +N  
Sbjct: 32  DGVPYRNWRRLMGNLEGWVQSGEARVWKMRSVLPSTSACCYASIHTGVSPQVHGILSNEN 91

Query: 100 VRLSREQSVFHLXXXXXXXXXXXXYHWVSELYSSAPFHPVADRHQHNVLKPIQHGSFYFE 159
                +  +F              + + SE + S PF  V D        PI HG F+  
Sbjct: 92  RFRVGQPDIFSEVSKAGGKTGAVTHSYWSEFFRSYPFDLVEDMEYDEPGGPITHGRFHTM 151

Query: 160 DHY--------PDSHVFADAEYLRAAYDPHFLYIHTMNIDDAGHRHGGESKEYEMAVRRV 211
             Y         D  +FA    L   +   +  +HT  +D  GHR G +  E + AV  +
Sbjct: 152 TGYNARNQMTPSDVDLFATLTMLTKRHGIDYGILHTCTLDSMGHRFGNDCHEMDHAVYAM 211

Query: 212 DGLLATLLPQWMEQGYTVLVTADHGMNANGCHGGVTPAERHVPLYAFGEKVLSPEQEIQA 271
           DG+LA  LP W+  GY V+VTADHG    G HGG     +   LY FG+    PE +   
Sbjct: 212 DGMLAAFLPGWIAAGYEVMVTADHGQTDRGHHGGHDDEMQDFALYYFGQG-QGPETDT-L 269

Query: 272 LPQLRLAPLMCYCLGIQPSAAM 293
           L QL+LAP +   LG+   A M
Sbjct: 270 LDQLQLAPTVLSRLGVPVPATM 291


>YKL165c [R] COG1524 Uncharacterized proteins of the AP superfamily
          Length = 919

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 22/132 (16%)

Query: 179 DPHFLYIHTMNIDDAGHRHGGESKEYEMAVRRVDGLLATLLPQ----WMEQGYTVLVTAD 234
           D +  ++H +  D AGH +   S EY   V+ +D  +  L+ +    + +     + TAD
Sbjct: 212 DGNVFFLHLLGCDTAGHSYRPYSAEYYDNVKYIDDQIPILIDKVNKFFADDKTAFIFTAD 271

Query: 235 HGMNANGCHGGVTPAERHVPLYAFGEKVLSP-------------EQEIQAL-----PQLR 276
           HGM+A G HG   P     PL A+G  +  P               E+ ++      Q  
Sbjct: 272 HGMSAFGSHGDGHPNNTRTPLVAWGAGLNKPVHNPFPVSDNYTENWELSSIKRNDVKQAD 331

Query: 277 LAPLMCYCLGIQ 288
           +A LM Y +G+ 
Sbjct: 332 IASLMSYLIGVN 343


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 22,700,206
Number of extensions: 903749
Number of successful extensions: 1171
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 213
Effective length of database: 26,153,027
Effective search space: 5570594751
Effective search space used: 5570594751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)