BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0069.p (307 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl586 [P] COG1178 ABC-type Fe3+ transport system, permease comp... 59 8e-09 RSc1792 [O] COG0555 ABC-type sulfate transport system, permease ... 59 1e-08 SP1688 [G] COG0395 ABC-type sugar transport system, permease com... 57 5e-08 SMa0394 [E] COG1176 ABC-type spermidine/putrescine transport sys... 55 2e-07 FN0309 [P] COG1178 ABC-type Fe3+ transport system, permease comp... 54 3e-07 >AGl586 [P] COG1178 ABC-type Fe3+ transport system, permease component Length = 135 Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 0/190 (0%), Positives = 0/190 (0%), Gaps = 7/190 (3%) Query: 16 VLMVLAFQVVPVFSMLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLISVFSSLIG 75 + + + + + A+ + L + S L Sbjct: 29 AGFLAFVFCLLDGLTAKPTIILGQFVSCLVGSVAGFHFVAFRRPGTDGQLYLIATSLLAF 88 Query: 76 LAVGLVCAYCITRFAPAVRDRLLMLSNMTSNFAGVPL--AFAYIILLGNNGVFTLLFKQW 133 + +Y + + + + Sbjct: 89 GTHYWLVSYSLPDL--LLARLISGFGSGVVVAGTFRRRF 146 Query: 134 GWNVFDGFNLYSWSGLILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAWQFWKT 193 Sbjct: 147 --- 203 Query: 194 VGLPVLSPAI 203 Sbjct: 204 213 >RSc1792 [O] COG0555 ABC-type sulfate transport system, permease component Length = 282 Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 13/194 (6%) Query: 21 AFQVVPVFSMLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLISVFSSLIGLAVGL 80 AF ++P+ ++L G+ L Y AL++ Y ++ +++++S +L L + Sbjct: 32 AFWLLPMAALL-----RVSGSEGLLATYTAALTTPRYLGSLVSTVVLSAAVTLATLVLSS 86 Query: 81 VCAYCITRFAPAVRDRLLMLSNMTSNFAGVPLAFAYIILLGNNGVF---TLLFKQWGWNV 137 V + R A + + + F GV + F I+L G G+ TL W V Sbjct: 87 VAGLFLVRHAVPGKRLITAMLTFPLAFPGVVVGFMVILLAGRQGLLGDLTLRLAGEKW-V 145 Query: 138 FDGFNLYSWSGLILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAWQFWKTVGLP 197 F YS GL L Y+YF IP A + EAA LGA +WQ + V +P Sbjct: 146 FA----YSIGGLFLGYLYFSIPRVVLTVMAAAEKLDRSLEEAARSLGASSWQVTRDVLVP 201 Query: 198 VLSPAIFGTLGILF 211 L+PA+ + I F Sbjct: 202 GLAPALIASGAICF 215 >SP1688 [G] COG0395 ABC-type sugar transport system, permease component Length = 277 Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 23/167 (13%) Query: 43 FTLDNYRHALSSAYYQQAIKNSLLISVFSSLIGLAVGLVCAYCITRFAP---AVRDRLLM 99 FTLD + H ++ ++ I+NSL+I++ ++LI + + + AY I RF P A+ RLL+ Sbjct: 54 FTLDYFTHVINDLHFIDNIRNSLIIALATTLIAIIISAMAAYGIVRFFPKLGAIMSRLLV 113 Query: 100 LSNMTSNFAGVPLAFAYIILLGNNGVFTLLFKQWGWNVFDGFNLYSWSGLILVYVYFQIP 159 ++ + F + LA Y I + G+ LF GL++VY+ F +P Sbjct: 114 ITYI---FPPILLAIPYSIAIAKVGLTNSLF-----------------GLMMVYLSFSVP 153 Query: 160 XXXXXXYPAFYGIREQWREAAALLGAGAWQFWKTVGLPVLSPAIFGT 206 F + EAA + GA + + V LP+++P I T Sbjct: 154 YAVWLLVGFFQTVPIGIEEAARIDGANKFVTFYKVVLPIVAPGIVAT 200 >SMa0394 [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I Length = 314 Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 5/175 (2%) Query: 32 TGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLISVFSSLIGLAVGLVCAYCITRFAP 91 T +F ++ +TL NY+ L+ +++ SL+ SV ++I L + AY + R Sbjct: 66 TNTFLMSES--YTLANYQRVLTESFFATVAGRSLVGSVIVTVITLLLAFPYAYLMVRTPS 123 Query: 92 AVRDRLLMLSNMTSNFAG-VPLAFAYIILLGNNGVFTLLFKQWGWNVFDGFNLYSWSGLI 150 + + L+++ F G V A+ ++I+LGN G+ G LY++ ++ Sbjct: 124 SALRKFLLVALFLPFFIGQVVRAYGWLIILGNQGMVNEALGLVGVPPIR--LLYNYPAVL 181 Query: 151 LVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAWQFWKTVGLPVLSPAIFG 205 V + +P PA I + AAA LGAG + ++ + LP+ P + G Sbjct: 182 FGLVQYMLPFAVLMLAPALTAIPSELEAAAASLGAGWTRTFRHIVLPLSRPGLVG 236 >FN0309 [P] COG1178 ABC-type Fe3+ transport system, permease component Length = 560 Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 14/203 (6%) Query: 8 LILALAPFVLMVLAFQVVPVFSMLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLI 67 +ILA+ F+L+ F+V P+F +L S G F+ + YR + A+KN+++ Sbjct: 15 VILAIVAFLLI---FEVFPLFYLLIKSLF--SGGSFSWEAYRRVYTYDLNWIALKNTIIT 69 Query: 68 SVFSSLIGLAVGLVCAYCITR---FAPAVRDRLLMLSNMTSNFAGVPLAFAYIILLG-NN 123 + F++++G+A+ A+ + R + L +++ M + G A A++ LL N Sbjct: 70 AGFTTILGVAIAFPLAFLVGRTDMYGKKFFRTLFVVTYMVPPYVG---AMAWLRLLNPNA 126 Query: 124 GVFT-LLFKQWGWNVFDGFNLYSWSGLILVYVYFQIPXXXXXXYPAFYGIREQWREAAAL 182 GV L K +G FN+Y+ SG++ V F P A + EA+ + Sbjct: 127 GVLNKFLMKIFGLGT-APFNIYTTSGIVWVLTCFFYPYAFITISRAMEKMDPSLEEASRI 185 Query: 183 LGAGAWQFWKTVGLPVLSPAIFG 205 GA + V +P+++P+I Sbjct: 186 SGASPLKTLFKVTIPMMTPSIIA 208 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,140,286 Number of extensions: 704839 Number of successful extensions: 2224 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 2250 Number of HSP's successfully gapped: 66 Length of query: 307 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 201 Effective length of database: 26,153,027 Effective search space: 5256758427 Effective search space used: 5256758427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)