BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0068.p (370 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3250 [P] COG1840 ABC-type Fe3+ transport system, periplasmic c... 410 e-114 Cj0727 [P] COG1840 ABC-type Fe3+ transport system, periplasmic c... 408 e-114 AGc3890 [P] COG1840 ABC-type Fe3+ transport system, periplasmic ... 168 1e-41 BMEII1120 [P] COG1840 ABC-type Fe3+ transport system, periplasmi... 167 2e-41 mll3069 [P] COG1840 ABC-type Fe3+ transport system, periplasmic ... 166 5e-41 >PA3250 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component Length = 352 Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/337 (57%), Positives = 247/337 (73%), Gaps = 1/337 (0%) Query: 35 GNSNAPAKELSLSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKYEITHTDTDMSSA 94 G+ A A E L +E A KEG V SVGMPDSWANWKDTW D+ +KY + H DTDMSSA Sbjct: 16 GSGLALAAEADLQALEQAARKEGQVNSVGMPDSWANWKDTWKDLESKYGLKHMDTDMSSA 75 Query: 95 EEIAKFEAEKDKPTADIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGY 154 +E+AKF+AEKD +ADIGDVG AFGP+AV +GV+QPYK S W++IP WAKD+DG+W + Y Sbjct: 76 QELAKFKAEKDNASADIGDVGAAFGPIAVQQGVSQPYKPSTWEQIPAWAKDQDGHWALAY 135 Query: 155 QGSIAFLTNTKLVANPPKSWEDLKNGSYKIIVGDVTKXXXXXXXXXXXXXXFGGDESNIE 214 G+IAF+ N +LV + P SW DL G YK+ +GDV+ GGDE NI+ Sbjct: 136 TGTIAFIVNKQLVKDVPHSWADLLQGKYKVTIGDVSAAAQAVNGVLAAAIANGGDEKNIK 195 Query: 215 PGIAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQIDKSGFDVAIPKEG 274 PG+ FF ++AK+GRLS +A +EKGEVEV ++WDFN L+Y+ QID F+V IP +G Sbjct: 196 PGLEFFGKIAKQGRLSLTNPVIATLEKGEVEVGIVWDFNGLSYRQQIDPERFEVLIPSDG 255 Query: 275 SVVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIR-DSVKLPEDVAAKLL 333 SV+SGY T+INK+A HPNAAKL REYI SD GQINLAKG ARPIR +S+ LP+DV A+LL Sbjct: 256 SVISGYTTIINKYAKHPNAAKLAREYIFSDAGQINLAKGNARPIRAESLTLPDDVKAQLL 315 Query: 334 PKEEYVNAKPVGDYKVWEETAKSLPQLWQERVLVHLN 370 P E+Y A+P+ D K WEET+K LP+ WQE V++++ Sbjct: 316 PNEQYAKAQPIKDAKAWEETSKRLPRQWQEAVIINMQ 352 >Cj0727 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component Length = 348 Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 241/318 (75%), Gaps = 1/318 (0%) Query: 53 ATKEGAVVSVGMPDSWANWKDTWNDITAKYEITHTDTDMSSAEEIAKFEAEKDKPTADIG 112 A EG V S+ MPD+WANWKDTW D+ Y+I H+DTDMSSA+EIAKF+ EK + DIG Sbjct: 30 AQAEGRVNSLAMPDTWANWKDTWADLKNLYDIEHSDTDMSSAQEIAKFKTEKKNASGDIG 89 Query: 113 DVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGYQGSIAFLTNTKLVANPPK 172 DVG +FG +AV +GV QP+KTSYWD+IP WAKDKDGNW++ Y G+IAF+ N +V + PK Sbjct: 90 DVGASFGEIAVKQGVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPK 149 Query: 173 SWEDLKNGSYKIIVGDVTKXXXXXXXXXXXXXXFGGDESNIEPGIAFFEELAKKGRLSNA 232 +W+DL G+YKI VGDV+ GGDE ++ P +AFF LAK+GRL N Sbjct: 150 TWQDLLKGNYKITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNN 209 Query: 233 EASLANIEKGEVEVTLLWDFNALNYKDQIDKSGFDVAIPKEGSVVSGYATVINKWAPHPN 292 + S+AN+EKGEVEV L+WDFN L Y+D++ K ++V IP +GSV+SGY T+INK+A HPN Sbjct: 210 DVSIANLEKGEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPN 269 Query: 293 AAKLTREYILSDEGQINLAKGYARPIR-DSVKLPEDVAAKLLPKEEYVNAKPVGDYKVWE 351 AAKL RE+ILSD+GQINLAKGYARPIR D + LP+D+ AKLLP E+Y NA+ + D K WE Sbjct: 270 AAKLAREFILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWE 329 Query: 352 ETAKSLPQLWQERVLVHL 369 ++AK LPQLWQE+V+V + Sbjct: 330 KSAKELPQLWQEKVIVDM 347 >AGc3890 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component Length = 289 Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 0/310 (0%), Positives = 0/310 (0%), Gaps = 19/310 (6%) Query: 47 SEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKY-EIT--HTDTDMSSAEEIAKFEAE 103 K G S + + + + + + E + Sbjct: 29 IIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNATIPHKEAAYRLADH 88 Query: 104 KDK--PTA-DIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGYQGSIAF 160 D + + G + + ++ + P W K + S A Sbjct: 89 PDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERHPGWDKTQRAVVFGAGGASRAV 148 Query: 161 LTNTKLVANPPKSWEDLKNGSYK---IIVGDVTKXXXXXXXXXXXXXXFG---GDESNIE 214 + + + + + G Sbjct: 149 IQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHPQAALQEVMHGAGLFVNTTSLG-M 207 Query: 215 PGIAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQI-DKSGFDVAIPKE 273 G + + + + + + + Sbjct: 208 NGTEAPHLDFSHLAANAVVTDIVYVPLKTPILNMAQEQGIATVDGLGMLLHQAKPGFRRW 267 Query: 274 GSVVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIR-----DSVKLPEDV 328 Sbjct: 268 327 Query: 329 AAKLLPKEEY 338 Sbjct: 328 337 >BMEII1120 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component Length = 367 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 155/308 (50%), Gaps = 16/308 (5%) Query: 47 SEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKY--EITHTDTDMSSAEEIAKFEAEK 104 +E+ A A EG + ++ +P W + D KY ++ + D S +E+ +A K Sbjct: 29 AELIAAAKAEGELTTIALPHDWCGYGDIIKSFKDKYGIKVNELNPDAGSGDEVEAIKANK 88 Query: 105 DK--PTA-DIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGYQGSIAFL 161 + P A D+ DVG AFG A G+TQ YK S WDEIPD AKD +G+W Y G +AF Sbjct: 89 NNKGPQAPDVIDVGFAFGTSAKKDGLTQAYKVSTWDEIPDSAKDPEGHWYGDYYGVLAFE 148 Query: 162 TNTKLVANPPKSWEDLKNGSYK---IIVGDVTKXXXXXXXXXXXXXXFGGD--ESNIEPG 216 N +V + P+ WEDL Y + GD G + E+ + G Sbjct: 149 VNKDIVKDAPQDWEDLLKSDYANAVALAGDPRVSAQAILGVHAAGIARGAEPGEAAGKKG 208 Query: 217 IAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQIDKSG-FDVAIPKEGS 275 + F++EL G A++ +G + + WD+N+L +D ++ + + IPK G Sbjct: 209 LEFYKELNANGNFVPVIGKAASLAQGSTPIVIRWDYNSLADRDTLNGNPEVETIIPKSGV 268 Query: 276 VVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIR-----DSVKLPEDVAA 330 + Y I+ +APHPNAAKL E+I SDEGQ+ KGY PIR + K+P+++ Sbjct: 269 IAGVYVQAISAYAPHPNAAKLWTEHIYSDEGQLGYLKGYCHPIRFNAMAKAGKIPQELLD 328 Query: 331 KLLPKEEY 338 KL P Y Sbjct: 329 KLPPAAAY 336 >mll3069 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component Length = 368 Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 111/313 (35%), Positives = 150/313 (47%), Gaps = 17/313 (5%) Query: 46 LSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKY---EITHTDTDMSSAEEIAKFEA 102 L ++ A EG + ++ +P W + D AKY I + D S +E+ +A Sbjct: 28 LDDLVKAAKAEGQLTTIALPHDWCGYGDVIAGFKAKYPEITINELNPDAGSGDEVEAIKA 87 Query: 103 EKDK--PTA-DIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGYQGSIA 159 KD P A D+ DVG++FGP A G+ Q YK S WD IPD AKD DG W Y G ++ Sbjct: 88 NKDNKGPQAPDVIDVGLSFGPSAKKDGLIQAYKVSTWDSIPDTAKDADGFWTGDYYGVLS 147 Query: 160 FLTNTKLVANPPKSWEDLKNGSYK---IIVGD--VTKXXXXXXXXXXXXXXFGGDESNIE 214 F N LV P W DL + + GD + E+ Sbjct: 148 FQVNKDLVKVSPTDWADLLKPEFANSVALAGDPRASNQAIQAVYAAGLSGGAAAGEAAGT 207 Query: 215 PGIAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQIDKS-GFDVAIPKE 273 G+ FF++L G A + +G+ + + WD+NAL +D + + DV +PK Sbjct: 208 AGLDFFKKLNAAGNFVPVIGKAATLAQGQTPILVTWDYNALAGRDTLKGNPPVDVVVPKT 267 Query: 274 GSVVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIR-----DSVKLPEDV 328 G V Y I+ +APHPNAAKL EY+ SDEGQI KGY PIR + K+P DV Sbjct: 268 GVVAGVYVQAISAFAPHPNAAKLWLEYLYSDEGQIAWLKGYCHPIRFNDLAKNGKIPADV 327 Query: 329 AAKLLPKEEYVNA 341 AKL P E Y A Sbjct: 328 LAKLPPAESYAAA 340 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.130 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,179,419 Number of extensions: 1162039 Number of successful extensions: 3400 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 3391 Number of HSP's successfully gapped: 12 Length of query: 370 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 262 Effective length of database: 25,922,359 Effective search space: 6791658058 Effective search space used: 6791658058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 116 (49.3 bits)