BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0065.p (258 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0107 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate tra... 153 3e-37 YPO0184 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 147 1e-35 SMc02345 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate tran... 135 4e-32 ZtauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transpo... 135 9e-32 ECs0421 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 135 9e-32 >BMEII0107 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 246 Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 127/214 (59%) Query: 30 GPDVIPGPWATLKGGRELIEDGTLMQYIGISFYRVLVGWVLGSLLAVPAGLIIGKVNVIR 89 G V+PGP L+ L+ +G L+ I S RVL G+VLG LA+P G ++G + R Sbjct: 29 GAVVLPGPVDVLERAVTLLLNGQLVGDIFASLRRVLSGFVLGVALAIPVGFLMGWYRIAR 88 Query: 90 IFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSKIALIMYATFFIVILNTLTGVMSVEEDK 149 EP++ F R IPP+A I L +V GI E KI +I A+F ++ T GV+SV+ Sbjct: 89 SLIEPWVQFFRMIPPLAVIPLAIVTLGIDESPKIFVIFLASFLSSVVATYQGVISVDRTL 148 Query: 150 IRSARSMGANEWQILLHVIVPATVPYIFTGVRLAMGTSYMAIIGAEMIASNEGVGYLIWN 209 I +AR +GA + I VIVPA+VP+I GVR+ +G+++ ++ AE+IA+ G+GY + Sbjct: 149 INAARVLGAKDATIFARVIVPASVPFILVGVRIGLGSAWATVVAAELIAAQSGLGYRMQQ 208 Query: 210 SRLFFRTDWIFVGLFCLGFMGFATDRLFGWFGRK 243 ++L++ IFV L +G +G DRL R+ Sbjct: 209 AQLYYDLPTIFVSLVTIGILGLFMDRLLQAADRR 242 >YPO0184 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 284 Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 138/253 (54%), Gaps = 14/253 (5%) Query: 5 EKKWVSVSLLWLAAFCIWQLGAL-LYGPDVIPGPWATLK-----GGRELIEDGTLMQYIG 58 + W+S++ L W + AL L GP +P P L + D TL Q++ Sbjct: 31 QTLWISIATLASVVALWWAVTALQLIGPLFLPAPQQVLHQLWTIASPQGFMDATLWQHLA 90 Query: 59 ISFYRVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIG 118 S R+ V + +L VP G+ +G + +R +P + R +PP+A++ L ++WFGIG Sbjct: 91 ASLGRIFVALLAAVVLGVPTGIAMGLNSNVRGVLDPLIEIYRPVPPLAYLPLMVIWFGIG 150 Query: 119 EQSKIALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFT 178 E SKI LI A F V L + GV SV ++R+AR++GA+ WQ+L V++P+ +P I T Sbjct: 151 ETSKILLIYLAIFAPVTLAAVAGVRSVAHVRVRAARALGASRWQVLWFVVLPSALPEILT 210 Query: 179 GVRLAMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATD---- 234 G+R+ +G + ++ AE+IA+ G+G+++ ++ F TD + G+ + + F + Sbjct: 211 GIRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVIAGISVIAIIAFGMELSLR 270 Query: 235 ----RLFGWFGRK 243 RL W+G + Sbjct: 271 AIQRRLTPWYGEQ 283 >SMc02345 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 287 Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 108/175 (61%) Query: 46 ELIEDGTLMQYIGISFYRVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPI 105 E+I G L +IGIS R +G++L + AVP G ++G+ ++ ++ + +R Sbjct: 77 EMIVSGQLADHIGISLERAAIGFLLACVTAVPLGFLMGRYSLFEKASDFLVQTLRNTSQF 136 Query: 106 AFITLFLVWFGIGEQSKIALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILL 165 A + +F++ GIGE SKIA+ YA F +++NT+ GV SV+ +++ARSMG ++W + Sbjct: 137 ALLPVFIIVLGIGEASKIAITFYAAVFFLLINTIVGVKSVDPLLVKAARSMGTSDWDLFK 196 Query: 166 HVIVPATVPYIFTGVRLAMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIF 220 VI P+ +P I G RL + TS ++I AEM+A+ G+GYLI +S L TD ++ Sbjct: 197 KVIFPSAIPSIVAGARLGVKTSLFSVIAAEMLAAQSGIGYLIQHSSLMLETDRMY 251 >ZtauC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 275 Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 8/224 (3%) Query: 2 KWVEKKWVSVSLLWLAAFCI--WQLGAL-LYGPDVIPGPWATLK-----GGRELIEDGTL 53 +W + V++S+ LA W + L L P +P P L+ G + D TL Sbjct: 17 RWPLSRQVTLSIGTLAVLLTVWWTVATLQLISPLFLPPPQQVLEKLLTIAGPQGFMDATL 76 Query: 54 MQYIGISFYRVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLV 113 Q++ S R+++ L +P G+ +G +R +P + R +PP+A++ L ++ Sbjct: 77 WQHLAASLTRIMLALFAAVLFGIPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVI 136 Query: 114 WFGIGEQSKIALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATV 173 WFGIGE SKI LI A F V ++ L GV SV++ +IR+A+S+GA+ Q+L VI+P + Sbjct: 137 WFGIGETSKILLIYLAIFAPVAMSALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGAL 196 Query: 174 PYIFTGVRLAMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTD 217 P I TG+R+ +G + ++ AE+IA+ G+G+++ ++ F TD Sbjct: 197 PEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD 240 >ECs0421 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 275 Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 8/224 (3%) Query: 2 KWVEKKWVSVSLLWLAAFCI--WQLGAL-LYGPDVIPGPWATLK-----GGRELIEDGTL 53 +W + V++S+ LA W + AL L P +P P L G + D TL Sbjct: 17 RWPLSRQVTLSIGTLAVLLTVWWTVAALQLISPLFLPPPQQVLAKLLTIAGPQGFMDATL 76 Query: 54 MQYIGISFYRVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLV 113 Q++ S R+++ + L+ +P G+ +G +R +P + R +PP+A++ L ++ Sbjct: 77 WQHLAASLTRIVLALLAAVLIGIPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVI 136 Query: 114 WFGIGEQSKIALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATV 173 WFGIGE SKI LI A F V ++ L GV S ++ +IR+A+S+GA+ Q+L VI+P + Sbjct: 137 WFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGAL 196 Query: 174 PYIFTGVRLAMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTD 217 P I TG+R+ +G + ++ AE+IA+ G+G+++ ++ F TD Sbjct: 197 PEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD 240 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.146 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,127,062 Number of extensions: 767758 Number of successful extensions: 3416 Number of sequences better than 1.0e-05: 135 Number of HSP's gapped: 3423 Number of HSP's successfully gapped: 136 Length of query: 258 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 154 Effective length of database: 26,383,695 Effective search space: 4063089030 Effective search space used: 4063089030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)