BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0064.p (258 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0107 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 225 4e-59 mll1253 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 214 1e-55 alr2879_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 212 5e-55 slr0043_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 210 2e-54 AGc2594 [G] COG1653 ABC-type sugar transport system, periplasmic... 209 3e-54 >CAC0107 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 279 Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 110/230 (47%), Positives = 158/230 (68%), Gaps = 3/230 (1%) Query: 29 YIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSGGNLRVDNVEVDKPGRDRAV 88 + + +VNL IK GEF LLGPSGCGKSTLLN+IAG + G + ++N+E+ PG DRA Sbjct: 20 HTLDEVNLSIKKGEFICLLGPSGCGKSTLLNIIAGLEKPTKGIVYLNNMEIKAPGPDRAF 79 Query: 89 VFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRYIGLVGLDGHEDKFPKELSGG 148 +FQ+ S+LFPWL V +NVEFG+++K PK ERR + +Y+ +V L ++ + ELSGG Sbjct: 80 MFQE--SALFPWLKVIDNVEFGMKIKDVPKEERREKALKYLKMVHLTKFQNSYVHELSGG 137 Query: 149 MKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELVHIWRETHKTVIFVTHDIQEA 208 M+QRV LAR L D +LLMDEPF ALD+ T+ +Q EL +IW ET KT++FVTH+++EA Sbjct: 138 MRQRVALARALTLDSEVLLMDEPFSALDSQTKSILQLELQNIWWETKKTIVFVTHNVEEA 197 Query: 209 LLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPELYALYNQIQSHFEE 258 +LL +R+ +M+ P I NI++ L PR+ S +L + ++ +E Sbjct: 198 VLLADRVVVMAANP-GRIKNIFEIKLARPREAQSVDLSYVAREVMRDLKE 246 >mll1253 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 267 Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/244 (45%), Positives = 155/244 (63%), Gaps = 6/244 (2%) Query: 12 IEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSGGN 71 IE + ++++ G + ++L + +F +LGPSGCGKSTLL ++AG + S G Sbjct: 10 IEGVSRTFAGVRGGLPVKALMPIDLAVAANDFITILGPSGCGKSTLLRIVAGLEAPSEGR 69 Query: 72 LRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRYIGL 131 + +D+ V +PG DR +VFQ +LFPWLTV EN+ FGLR + ER I Y+ L Sbjct: 70 VLLDDKAVTRPGPDRGMVFQS--YTLFPWLTVSENIAFGLRERGMAPKERDDIVASYVDL 127 Query: 132 VGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELVHIW 191 VGL G E+ +PK+LSGGM+QR +AR LANDP ILL+DEPFGALD TR MQ+ L+ IW Sbjct: 128 VGLKGFENHWPKQLSGGMQQRTAIARALANDPEILLLDEPFGALDNQTRGLMQELLLGIW 187 Query: 192 RETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDV---ASPELYAL 248 KTV+FVTHDI+EA+ + R+ +M+ P S +++ + LP PR SPE AL Sbjct: 188 ERRKKTVLFVTHDIEEAIFMASRVIVMTARPGSIKSDVAID-LPHPRHYTLKTSPEFSAL 246 Query: 249 YNQI 252 ++ Sbjct: 247 KARL 250 >alr2879_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 254 Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 115/249 (46%), Positives = 161/249 (64%), Gaps = 9/249 (3%) Query: 10 IHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSG 69 + ++Q+ K + E G + +K ++L I+ GEF L+G SGCGKSTLLNMIAG S Sbjct: 5 VAVDQIDKVF-ELTGGGKYIALKGIDLQIRKGEFVSLIGHSGCGKSTLLNMIAGLDLPSE 63 Query: 70 GNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLR--MKKTPKAERRAISDR 127 G + ++ V +PG DR VVFQ + SL PW TVREN+ + MK P+AER++I ++ Sbjct: 64 GIVTLEGQRVSRPGPDRMVVFQ--NYSLLPWRTVRENIALAVNSVMKGMPEAERKSIIEK 121 Query: 128 YIGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKEL 187 YI +VGL H DK P LSGG KQRV +AR LA P +LL+DEPFGALDA+TR +Q++L Sbjct: 122 YIDMVGLRPHADKQPGMLSGGQKQRVAIARALAIRPKLLLLDEPFGALDALTRGNLQEQL 181 Query: 188 VHIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRD----VASP 243 + I E T + VTHD+ EA+LL +RI +++ GP S I +I + +P PR V P Sbjct: 182 MQICEENEVTAVMVTHDVDEAVLLSDRIVMLTNGPESKIGDILEVDIPRPRKRMEVVEHP 241 Query: 244 ELYALYNQI 252 Y+L +++ Sbjct: 242 SYYSLRSEM 250 >slr0043_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 276 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 114/249 (45%), Positives = 161/249 (64%), Gaps = 9/249 (3%) Query: 10 IHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSG 69 + ++ + K +S + G+ + +K +NL IK GEF L+G SGCGKSTLLNMIAG S Sbjct: 5 VAVDNIDKVFSLTDGGE-YIALKGINLEIKKGEFVSLIGHSGCGKSTLLNMIAGLDLPSE 63 Query: 70 GNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLR--MKKTPKAERRAISDR 127 G + ++ + +PG D+ V+FQ + SL PWLTV++N+ + MK AER+AI + Sbjct: 64 GIVTLEGQRIKQPGPDKMVIFQ--NYSLLPWLTVKQNIALAVDEVMKGASAAERKAIVEE 121 Query: 128 YIGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKEL 187 +I LVGL DK P ELSGGMKQRV +AR LA P +LL+DEPFGALDA+TR +Q++L Sbjct: 122 HINLVGLGHAVDKRPGELSGGMKQRVAIARALAIRPKLLLLDEPFGALDALTRGNLQEQL 181 Query: 188 VHIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRD----VASP 243 + I + T + VTHD+ EA+LL +RI +++ GP SNI I + +P PR V P Sbjct: 182 MRICEQYQVTAVMVTHDVDEAVLLSDRIVMLTNGPGSNIGGILEVDIPRPRKRMEVVEHP 241 Query: 244 ELYALYNQI 252 Y+L ++I Sbjct: 242 SYYSLRSEI 250 >AGc2594 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 218 Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 0/244 (0%), Positives = 0/244 (0%), Gaps = 6/244 (2%) Query: 12 IEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKSGGN 71 +R S + ++++ P+ + L + + Sbjct: 11 NRIIRSRQSMKQELILASSSASRQMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEV 70 Query: 72 LRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRYIGL 131 + + V + ++S + L Sbjct: 71 ALELARAKALAVSALHPEAL--VLGCDQTMALGTRVYHKPKNMAEAATHLLSLSGKVHRL 128 Query: 132 VGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELVHIW 191 + + + A + L AL ++ +++E + ++ Sbjct: 129 NSAAVLVHNGKVVWQTVSSAELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLF 188 Query: 192 RETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDV---ASPELYAL 248 Sbjct: 189 - 247 Query: 249 YNQI 252 Sbjct: 248 251 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,190,656 Number of extensions: 804725 Number of successful extensions: 18381 Number of sequences better than 1.0e-05: 2124 Number of HSP's gapped: 15705 Number of HSP's successfully gapped: 2311 Length of query: 258 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 154 Effective length of database: 26,383,695 Effective search space: 4063089030 Effective search space used: 4063089030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)