BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0061.p
         (180 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0915 [K] COG1846 Transcriptional regulators                          50   1e-06
TM0710 [K] COG1846 Transcriptional regulators                          49   3e-06
STM0710 [E] COG3104 Dipeptide/tripeptide permease                      49   3e-06

>CC0915 [K] COG1846 Transcriptional regulators
          Length = 148

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query: 34  GIALPGMLILQKIIRDGEQRLGDLAEQLDFTSGAITALSDKLEAGGHTVRRRKEDDRRTV 93
           G+  P  L +  +     + +G L E LD  S  +T L  +LEAGG   R R  +D R V
Sbjct: 44  GLTYPQYLAMLVLWEASPRTVGALGEALDLDSSTLTPLLKRLEAGGLVTRDRDPEDERRV 103

Query: 94  LMGITEKGREMVERNGSIGER 114
           ++ +T+KGR + ++  +I E+
Sbjct: 104 IVALTDKGRALRDQAVTIPEK 124


>TM0710 [K] COG1846 Transcriptional regulators
          Length = 143

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%)

Query: 34  GIALPGMLILQKIIRDGEQRLGDLAEQLDFTSGAITALSDKLEAGGHTVRRRKEDDRRTV 93
           GI      ILQKI  +G +R G+L+  L      +T L  +LEA G+  R     DRR  
Sbjct: 28  GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAY 87

Query: 94  LMGITEKGREMVER 107
            + IT KG E++E+
Sbjct: 88  FLVITRKGEEVIEK 101


>STM0710 [E] COG3104 Dipeptide/tripeptide permease
          Length = 493

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 4/74 (5%), Positives = 13/74 (17%)

Query: 34  GIALPGMLILQKIIRDGEQRLGDLAEQLDFTSGAITALSDKLEAGGHTVRRRKEDDRRTV 93
             AL  + +  ++  D        +                 +                 
Sbjct: 28  MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGYLADKVLGNRMAVMLGAFLMA 87

Query: 94  LMGITEKGREMVER 107
           +  +     E+   
Sbjct: 88  IGHLVLGASEIAPT 101


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,843,852
Number of extensions: 405834
Number of successful extensions: 1650
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1655
Number of HSP's successfully gapped: 3
Length of query: 180
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 80
Effective length of database: 26,845,031
Effective search space: 2147602480
Effective search space used: 2147602480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)