BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0058.p
         (373 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer ...    50   6e-06

>YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer transport
           system
          Length = 430

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 12/204 (5%)

Query: 106 LYLRTLSSGTETPLQEGEKNYGAAQLSPDKKQLFYKELYDATGLGFIMNLATGASVKVSD 165
           L ++TL++G    +    ++ GA   SPD  +L +      +   ++M+LA+G   +V+D
Sbjct: 226 LVIQTLANGAIRQVASFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTD 285

Query: 166 AEFRSEEGSW-ADNEHVIYPDMEG---TIVKADVNGK-QETVVKTGVSYVHEVVQTGGRI 220
               + E SW  D++++ Y   +G    + K ++NG   + +   G    +  V   G+ 
Sbjct: 286 GRSNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNINGGVPQRITWEGSQNQNADVSPDGKF 345

Query: 221 LYV---TGEDSELSAYDTETKQTKVLKKNVLWVIPS--PDGSRLAIVERVKPGEMVLLLC 275
           L +    G    ++  D ET   +VL   +L   PS  P+G+ + I    +    VL L 
Sbjct: 346 LVLVSSNGGAQHIAKQDLETGAVQVLTDTLLDETPSIAPNGT-MVIYSSTQGLGSVLQLV 404

Query: 276 DSEGSEQSRL-AVGQQIFGTSWSP 298
            ++G  ++RL A   Q+   +WSP
Sbjct: 405 STDGRFKARLPATDGQVKFPAWSP 428


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.311    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 26,734,585
Number of extensions: 1158482
Number of successful extensions: 1591
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1594
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 265
Effective length of database: 25,922,359
Effective search space: 6869425135
Effective search space used: 6869425135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)