BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0050.p (302 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3628 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 326 4e-89 CAC3635 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 318 4e-87 CAC3641 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 310 2e-84 BS_oppF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 307 2e-83 BS_ykfD [E] COG4608 ABC-type oligopeptide transport system, ATPa... 305 5e-83 >CAC3628 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 326 bits (835), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 163/278 (58%), Positives = 204/278 (73%), Gaps = 8/278 (2%) Query: 2 SDSKVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVG 61 + S VL++V NL+K+F+ G + A+LKAVD VSF I++GET GLVGESG GK+T G Sbjct: 5 NKSDVLIEVKNLKKYFNVGHN------AILKAVDDVSFTIKKGETLGLVGESGCGKTTCG 58 Query: 62 RCLLRLYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEP 121 R +L LY T GEV +DG + L K K F ++ Q IFQDPY+ LNP + V ++I+E Sbjct: 59 RTVLGLYQATEGEVNYDGVNIHSLRGKAKKEFSKKAQMIFQDPYACLNPRMTVGDIIAEG 118 Query: 122 MKIHGIYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVC 181 + +HG+Y+G VGL REH RFPHEFSGGQRQRI IARAL++ PEF+VC Sbjct: 119 IDVHGLYKGEERTKKIYEMLDHVGLNREHASRFPHEFSGGQRQRIGIARALAINPEFIVC 178 Query: 182 DEPISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVAD 241 DEPISALDVS+QAQ+VN+L LQ E GLTYLFIAHDLSMV+HISDR+GVMY G +VE A Sbjct: 179 DEPISALDVSIQAQIVNLLIKLQREMGLTYLFIAHDLSMVKHISDRVGVMYLGTMVEFAA 238 Query: 242 SDELYDNPLHPYTKALLSSILETDPR--KGSRRIRLEG 277 S +LY+NPLHPYTKAL+S+I DP+ K +RI+LEG Sbjct: 239 SHDLYENPLHPYTKALMSAIPIPDPKVEKTRQRIKLEG 276 >CAC3635 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 350 Score = 318 bits (816), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 162/275 (58%), Positives = 209/275 (76%), Gaps = 2/275 (0%) Query: 5 KVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCL 64 KVL++V NL+K F K G++ + +KAVDGVSFQI++GET GLVGESG GK+T GR + Sbjct: 29 KVLLEVKNLKKWFPVKKGFFGKNVSNVKAVDGVSFQIKKGETLGLVGESGCGKTTTGRTI 88 Query: 65 LRLYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKI 124 L+LY+ T G++ ++G+ + KL K + P+RR++Q IFQDPY+SLN + V ++I E + I Sbjct: 89 LKLYEPTSGQIIYNGKDIAKLSYKEMLPYRRKMQMIFQDPYASLNSRMTVGDIIGESIDI 148 Query: 125 HGIYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEP 184 H ++ G VGL +H+ R+PHEFSGGQRQRI IARAL+V PEF+VCDEP Sbjct: 149 HKLWTGKERKERIEYLLKKVGLNGDHINRYPHEFSGGQRQRIGIARALAVEPEFIVCDEP 208 Query: 185 ISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDE 244 ISALDVS+QAQVVNMLE+LQ E GLTYLFIAHDLSMV+HIS +IGVMY G L+EV +S E Sbjct: 209 ISALDVSIQAQVVNMLEELQEELGLTYLFIAHDLSMVKHISTKIGVMYLGNLIEVGESSE 268 Query: 245 LYDNPLHPYTKALLSSILETDPRKGS--RRIRLEG 277 LY+NPLHPYTKALLS++ DP + + +RI LEG Sbjct: 269 LYNNPLHPYTKALLSAVPVPDPDEAAARQRIILEG 303 >CAC3641 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 326 Score = 310 bits (794), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 161/275 (58%), Positives = 204/275 (74%), Gaps = 2/275 (0%) Query: 5 KVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCL 64 KVL++V NL+K F K G + +KAVD VSF I +GET GLVGESG GK+T GR + Sbjct: 5 KVLLEVKNLKKWFPVKKGFFGGKVSNVKAVDDVSFTINKGETLGLVGESGCGKTTTGRTV 64 Query: 65 LRLYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKI 124 L+LY+ T G++ +DG+ + KL K + P+RR++Q IFQDPY+SLN + V ++I E + I Sbjct: 65 LKLYEPTSGQIIYDGKDIAKLSYKEMLPYRRKMQMIFQDPYASLNSRMTVGDIIGESIDI 124 Query: 125 HGIYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEP 184 H + +G VGL +H+ R+PHEFSGGQRQRI IARAL+V PEF+VCDEP Sbjct: 125 HNLSKGNERKERIEYLLKKVGLNGDHINRYPHEFSGGQRQRIGIARALAVEPEFIVCDEP 184 Query: 185 ISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDE 244 ISALDVS+QAQVVNMLE+LQ E GLTYLFIAHDLSMV+HIS +IGVMY G L+EV +S E Sbjct: 185 ISALDVSIQAQVVNMLEELQEELGLTYLFIAHDLSMVKHISTKIGVMYLGNLIEVGESSE 244 Query: 245 LYDNPLHPYTKALLSSILETDPRKGS--RRIRLEG 277 LY+NPLHPYTKALLS++ DP + + +RI LEG Sbjct: 245 LYNNPLHPYTKALLSAVPVPDPDEAAARQRIILEG 279 >BS_oppF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 334 Score = 307 bits (786), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 15/301 (4%), Positives = 41/301 (13%), Gaps = 13/301 (4%) Query: 4 SKVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRC 63 + V L + F + G + Sbjct: 2 NAVTEGRKVLLEIADLKV-------HFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLG 54 Query: 64 LLRLYDYTGGEVFFDGQPL-GKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPM 122 ++ L + + + + + + + + Sbjct: 55 VVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASL 114 Query: 123 KIHGIYQGXXXXXX-XXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVC 181 RE + + S + Sbjct: 115 NPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIG 174 Query: 182 DEPISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVAD 241 L+ + + S + + I A Sbjct: 175 IARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDR 234 Query: 242 SDELYDNPLHPYTKALLSSILETDPRKGSRRIRLEGY--SGGSGADARAV-LREVSPGHY 298 +Y P + + E+ Sbjct: 235 VLVMYLGHAVELGTYDEVYHNPLHPYTRALMSA-VPIPDPDLEKNKTIQLLEGELPSPIN 293 Query: 299 V 299 Sbjct: 294 P 294 >BS_ykfD [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 475 Score = 305 bits (782), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 17/270 (6%), Positives = 45/270 (16%), Gaps = 7/270 (2%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 + Q++ + + + +S G + LL Sbjct: 6 EGYMQTTQQNAPLKRT------MKTRHLIMLSLGGVIGTGLFFNTGYIISTTGAAGTLLA 59 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 + + P + + + + Sbjct: 60 YLIGALVVWLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSF 119 Query: 127 IYQGXXXXXXXX-XXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPI 185 G + + + S +L + Sbjct: 120 TAAGFCMQYWFPQVPVWVWCVVFCAIIFGLNVISTRFFAEGEFWFSLVKVVTIIAFIILG 179 Query: 186 SALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDEL 245 A S F L ++ + L+ +A + Sbjct: 180 GAAIFGFIPMQDGSPAPGLSNITAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETE 239 Query: 246 YDNPLHPYTKALLSSILETDPRKGSRRIRL 275 + P + L + Sbjct: 240 NPRKVIPVAIRTTIARLIIFFIGTVFVLAA 269 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,624,662 Number of extensions: 935921 Number of successful extensions: 8434 Number of sequences better than 1.0e-05: 1826 Number of HSP's gapped: 6531 Number of HSP's successfully gapped: 2000 Length of query: 302 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 196 Effective length of database: 26,153,027 Effective search space: 5125993292 Effective search space used: 5125993292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)