BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0045.p (522 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PH0807 [E] COG0747 ABC-type dipeptide transport system, periplas... 194 3e-49 FN0396 [E] COG0747 ABC-type dipeptide transport system, periplas... 180 4e-45 FN0998 [E] COG0747 ABC-type dipeptide transport system, periplas... 163 7e-40 SMa0104 [E] COG0747 ABC-type dipeptide transport system, peripla... 157 6e-38 AGl2768 [E] COG0747 ABC-type dipeptide transport system, peripla... 155 2e-37 >PH0807 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 597 Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 157/501 (31%), Positives = 236/501 (47%), Gaps = 39/501 (7%) Query: 35 GGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFY-LADSLTPSADNL 93 GG+LI+ DP NP+ D I ++ L ++ LA S D Sbjct: 38 GGTLIVLYWGDPKSFNPDAQVDDAGYGIANQIFCKLVTLDRDYNVIPDLAYKWEISDDGK 97 Query: 94 TYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITATKVDDLTV 153 YT L TWHDG +TA+DV +T E I K+ + + D VD+ TV Sbjct: 98 VYTFYLNPNATWHDGVPVTAEDVKWTFEAI---KKYKGIAYGIIHADNIEKIEVVDNYTV 154 Query: 154 EFKLPQVSPAFEATLVQVTP--IPKHIFENEADI--EKSTKNAAPVGSGPFKFKEYKAGE 209 F L + F + L +PKHI+E +D K+ P+G GPFKF E+ G+ Sbjct: 155 RFYLKEPFAPFLSFLAWYGTFILPKHIYEKYSDWLDPKNPYLNKPIGCGPFKFVEWVKGD 214 Query: 210 YLTLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQYLDP--KDVSTIQATNN 267 ++TL +NYF G+P +D + Y+I D +AA A GE +V P ++ +++T Sbjct: 215 HITLVANENYFRGRPGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTEIPRLKSTPG 274 Query: 268 FEILPYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKSF 327 + YL FN L VR A++ A++R E+++ A Y PA+ Sbjct: 275 VSVSIRPVPSRWYLGFNLKRPY--LQDVRVRLAIAYAINRKELVEKAENGLGY--PAEGT 330 Query: 328 LTPDALYFTN---DVPTYDNDPAKAKELLQSAGVSN--------------LKLRFIVQSG 370 P + N +P Y+ P KAK+LL AG + L+LR + +G Sbjct: 331 YVPAIKWAYNPNAKLPEYN--PEKAKQLLDEAGFKDINGDGFRETPDGKPLELRLLYFTG 388 Query: 371 NKAQEAISLYVQQKLKAIGVDVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAY 430 + AI ++++L +G+ V+L+S + + W QK + K D++LAL G DP Sbjct: 389 SDTN-AICTLIKEQLAKVGLKVKLESYEIATWEQKVV--KERDFDLALVDGFQGPDPANM 445 Query: 431 RILFTSGASSNYSHYANPEVDKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTK 490 I F S A N++ Y N E DKLL E A DT KR E+Y KAQE++A+D P P+ Sbjct: 446 EIRFKSTAYINFAGYNNTEFDKLLEEAAKTTDTEKRKELYWKAQEILAKDLPYLPLVDLV 505 Query: 491 TVVAVSKNYGGL---EEAVLK 508 + + G+ +EAV K Sbjct: 506 AISVWRSEFHGMPWEDEAVGK 526 >FN0396 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 511 Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 144/472 (30%), Positives = 245/472 (51%), Gaps = 32/472 (6%) Query: 27 AAGEGPKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNN-GKKTFYLADS 85 A G +D +L+IG AD L+P+ + D S + ++ L +++ G LA+S Sbjct: 31 AGAGGKRD--TLVIGNGADAKSLDPHASNDNPSSNVRVQIFDTLMDLDDDGIPQPMLAES 88 Query: 86 LTPSADNLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITA 145 D+ T L+ G+ +H+G+++ A DV F++E+ L + S + A IN + Sbjct: 89 WE-RPDDKTIIFHLRKGVKFHNGDEMKASDVKFSLERALKSPEVSHILAG--INGVEV-- 143 Query: 146 TKVDDLTVEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTK-NAAPVGSGPFKFKE 204 +DD TV+ + A L T I +A E K P+G+GP+KF Sbjct: 144 --LDDYTVKVTTEKPMAAILNNLSHTTI---AILSEKATTEAGDKFGQNPIGTGPYKFVS 198 Query: 205 YKAGEYLTLERFDNYFGGKPHLDSVTYR-IAKDTNAANLALQNGEINVQY-LDPKDVSTI 262 +++G+ +TLE F +Y+ G+ + ++ +R I ++TN + L+ GE+++ Y + D + + Sbjct: 199 WQSGDRITLEAFPDYWRGETPVKNIVFRNIVEETNRT-IGLETGELDIAYDIKGLDKNKL 257 Query: 263 QATNNFEILPYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYAD 322 + F +L + ++YL FN +VR+A+S A+ + II T + + Sbjct: 258 KEDERFTLLEGPQVSITYLGFNLRK--APYDNLKVREAISYAIDQKPIIDTVFLGA--GE 313 Query: 323 PAKSFLTPDALYFTNDVPTYDNDPAKAKELLQSAGVSNLKLRFIVQSGNKAQEAISLYVQ 382 PA S + P+ ++ DV Y D KAK LL AG N I + N + ++ +Q Sbjct: 314 PANSIIGPN-IWGYYDVEKYTQDIEKAKALLVEAGYPNGFKAKIWVNDNPVRRDTAVILQ 372 Query: 383 QKLKAIGVDVELQSMDSSAWVQKFID-LKSTDYELALTGY-IMGYDPD--AYRILFTS-- 436 +LK IG+D+ +++++ A F+D D+E+ L G+ + DPD + ++ +S Sbjct: 373 DQLKQIGIDLTIETVEWGA----FLDGTARGDHEMYLLGWGTVTRDPDYGMFELISSSTM 428 Query: 437 GASSNYSHYANPEVDKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAY 488 GA+ N S Y+NPEVDKLL G E D KR +IYK+ QE+V +D P+Y I Y Sbjct: 429 GAAGNRSFYSNPEVDKLLEAGKTELDPEKRKDIYKQIQEIVRRDIPMYMIVY 480 >FN0998 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 500 Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 129/479 (26%), Positives = 229/479 (47%), Gaps = 29/479 (6%) Query: 34 DGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLF-QVNNGKKTFYLADSLTPSADN 92 +G +++IG A P L+P+ L + + Y LF + +G LA+S D Sbjct: 27 NGSTVVIGQGAKPKSLDPHMYNSIPDLLVSRQFYNTLFSREKDGSIKPELAESYEYKNDK 86 Query: 93 LTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITATKVDDLT 152 + LK GL +HDG +LTADDVVF+ E++ D+ +S + DK KV+D Sbjct: 87 -ELDIILKKGLKFHDGSELTADDVVFSFERMKDKPGSSIMVEEI---DK---VEKVNDYE 139 Query: 153 VEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTK-NAAPVGSGPFKFKEYKAGEYL 211 ++ L S A L PI + N+ +E + AP+G+G FK Y GE + Sbjct: 140 IKLFLKNSSSALLYNLAH--PITSIV--NKKYVEAGNDLSVAPMGTGAFKLIAYNDGEKI 195 Query: 212 TLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQY-LDPKDVSTIQATNNFEI 270 LE F +YF G P ++ +T+R + + AL+ GE+++ + P TI+A + ++ Sbjct: 196 ELEAFKDYFEGAPKVEKITFRAIPEDTSMLAALETGEVDIATGMPPVSTQTIEANDKLDL 255 Query: 271 LPYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKSFLTP 330 + Y+ N + K+ R+AL+ A+ + II + ++ AKS + P Sbjct: 256 ISEPTTATEYICLNV--EKVPFDNKDFRKALNYAIDKQSIIDSIFSG--RGKVAKSIVNP 311 Query: 331 DALYFTNDVPTYDNDPAKAKELLQSAGVSNLKLRFIVQSGNKAQEAISLYVQQKLKAIGV 390 + + + Y +P KAKEL++ +GV ++ V + + ++ +Q LK +G+ Sbjct: 312 NVFGYYDGFEEYPFNPEKAKELIEKSGVKDMSFSLYVND-SPVRLQVAQIIQANLKDVGI 370 Query: 391 DVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAYRILF------TSGASSNYSH 444 D+ +++++ ++QK D+ L G+I G DA +L+ + G N + Sbjct: 371 DMNIETLEWGTYLQK---TGEGDFSAYLGGWISGTS-DADIVLYPLLDSKSIGFPGNRAR 426 Query: 445 YANPEVDKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTKTVVAVSKNYGGLE 503 Y+NPE DK + +R E +K AQ + +D+P+ + + ++K G E Sbjct: 427 YSNPEFDKEVEMARIALKPEERKEHFKNAQIISQEDSPLIVLYNKNENIGINKRIKGFE 485 >SMa0104 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 530 Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 141/497 (28%), Positives = 238/497 (47%), Gaps = 44/497 (8%) Query: 33 KDGGSLII------GVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSL 86 + GG+L+ A V +PN + ++ I +ALY+ + N K LA S Sbjct: 25 RHGGTLVFTAPYGSSFATLDVQSSPNTQEEFITQAIHRALYS--WDSNQNKPVLELATSE 82 Query: 87 TPSADNLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLI-------- 138 S D +T L+ +H+G+ LTADD++++ ++I + +N+F A+F+ Sbjct: 83 EVSEDGKVHTYHLRKNAVFHNGKPLTADDIIYSYKRIAN-PENAFPGASFIAVIKGAEDY 141 Query: 139 ----NDKPITATKVDDLTVEFKLP-QVSPAFEATLVQVTPIPKHIFENEADIEKSTKNAA 193 D+ K+DD T+E ++P F L+Q T + I+ + + E ST Sbjct: 142 IAGKADEISGLKKIDDHTLEITYTGTINPGF--PLMQNTTV---IYPSNVEGE-STFGKN 195 Query: 194 PVGSGPFKFKEYKAGEYLTLERFDNYFG-GKPHLDSVTYRIAKDTNAANLALQNGEINVQ 252 PVG G F FKE+ G + +E+FD Y+ G+P+LD + + + A ++A +N EI+V Sbjct: 196 PVGLGAFVFKEHVPGSQVVVEKFDKYYEEGRPYLDRINIVLMAEDAARDVAFRNKEIDVS 255 Query: 253 YLDPKDVSTIQATNNFE--ILPYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEI 310 L P Q + +L AE + FN + K VRQA++ A++ I Sbjct: 256 ILGPTQYQAYQGEEGLKDHLLEVAEVYTRNIGFNPAFE--PFKDKRVRQAINHAINAPLI 313 Query: 311 IQTAYTSGEYADPAKSFLTPDALYFTNDVPTYDNDPAKAKELLQSAGVSNLKLRFIVQSG 370 I+ + Y PA +L + F D Y DP KAK LL AG ++ F V + Sbjct: 314 IERLVKNKAY--PASGWLPISSPAFDKDKAPYAYDPEKAKALLAEAGYAD-GFEFEVTAS 370 Query: 371 NKAQEAISLY--VQQKLKAIGVDVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDP- 427 + + + LK +G+ V+ + ++SS + + + +++ + + G DP Sbjct: 371 PNESWGVPIVEAILPMLKKVGITVKPKPVESSTLGEA---VTTNNFQAFIWSNLSGPDPL 427 Query: 428 DAYRILFTSGASS--NYSHYANPEVDKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYP 485 +A R ++ A S NY+ YA+PE DKL E D+AK+ ++ ++A +V DAP++ Sbjct: 428 NALRCYYSKTAQSACNYTSYASPEFDKLYEAAQQERDSAKQNDLLRQANNIVQDDAPVWF 487 Query: 486 IAYTKTVVAVSKNYGGL 502 Y K V+A GL Sbjct: 488 FNYNKAVMAYQPWIHGL 504 >AGl2768 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 137 Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 0/494 (0%), Positives = 0/494 (0%), Gaps = 47/494 (9%) Query: 28 AGEGPKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTF-YLADSL 86 + + + A+D + + D+V + ++TF + Sbjct: 28 TLQCLTEDVVWKVQGASDVPTIGLRHGRDQVRDWMALFPVNFEPLDFQVERTFESGDKVV 87 Query: 87 TPSADNLTYTLKLKSGLTWHDGEKLTADDVVFTI---EKILDEKQNSFLRANFLINDKPI 143 K ++ D V Sbjct: 88 IIGNFKHRIRRTGKDFVSDFAAICSVRDGKVSAYNFI 147 Query: 144 TATKVDDLTVEFKLPQVSPAFEATLV-QVTPI-PKHIFENEADIEKSTKNAAPVGSGPFK 201 Sbjct: 148 --------- 198 Query: 202 FKEYKAGEYLTLERFDNYFGGK-PHLDSVTYRIAKDTNAANLALQNGE----INVQYLDP 256 Sbjct: 199 --- 255 Query: 257 KDVSTIQATNNFEILPYAEGRL-SYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAY 315 Sbjct: 256 - 314 Query: 316 TSGEYADPAKSFLTPDALYFTNDVP-TYDNDPAKAKELLQSAGVS--------NLKLRFI 366 Sbjct: 315 - 373 Query: 367 VQSGNKAQEAISLYVQQKLKAIGVDVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYD 426 Sbjct: 374 ----- 428 Query: 427 PDA--YRILFTSGASS-----NYSHYANPEVDKLLNEGAGEADTAKRAEIYKKAQELVAQ 479 Sbjct: 429 488 Query: 480 DAPIYPIAYTKTVV 493 Sbjct: 489 502 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 37,353,024 Number of extensions: 1582427 Number of successful extensions: 3200 Number of sequences better than 1.0e-05: 217 Number of HSP's gapped: 2748 Number of HSP's successfully gapped: 223 Length of query: 522 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 411 Effective length of database: 25,576,357 Effective search space: 10511882727 Effective search space used: 10511882727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)