BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0040.p (328 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all1488 [O] COG2214 DnaJ-class molecular chaperone 112 6e-25 slr0093 [O] COG2214 DnaJ-class molecular chaperone 106 5e-23 CC2772 [O] COG2214 DnaJ-class molecular chaperone 100 4e-21 all4643 [O] COG2214 DnaJ-class molecular chaperone 98 1e-20 sll1933 [O] COG2214 DnaJ-class molecular chaperone 93 7e-19 >all1488 [O] COG2214 DnaJ-class molecular chaperone Length = 315 Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Query: 147 MQAQLEVSLEQAYKGGSIRVQVGGKDVNVSIPPRSAEGTVIRIPGS--SGNGAGQDGDLL 204 +A + ++ +A+ G R+Q+ + +NV IPP + G+ IRI G + Q GDL Sbjct: 141 TEAAIALTFSEAFHGVQKRLQLDEETINVRIPPGAKPGSRIRIKGKGRPSPFSQQRGDLY 200 Query: 205 ISLHLLPHNIYEPDGGDLYGTVEIAPWQAVLGGEAKVPLPDGSSVKLKVPAGMAGGQTLR 264 +++ +LPH + +G +L + I P +AVLG + VP PDGS V +K+P G+ GQ+LR Sbjct: 201 LTIEVLPHPFFRFEGDNLVCEIPIRPDEAVLGAQISVPTPDGS-VTMKIPKGVRSGQSLR 259 Query: 265 LSGKGLKRPNGANGDILFAVEIVIPAGLTEAEKKLYRQLAEAGSF 309 L GKG P G GD+ +++V P L+ E++ Y ++ SF Sbjct: 260 LRGKGWTLPKGGRGDLFAKLQMVTPQDLSAIEQEYYEKIQANTSF 304 Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 4 NYYEALGVGEKASKQEIKKAYQKLAKKWHPDVNX-XXXXXXXXXXXXXXXXVLGNDEKRK 62 +YY LGV + A+ +EIK+AY+KLA+K+HPD+N VL + EKR+ Sbjct: 10 DYYAVLGVSKTATPEEIKRAYRKLARKYHPDLNPGDKDAEAKFKDLNEANEVLSDPEKRQ 69 Query: 63 AYD 65 YD Sbjct: 70 KYD 72 >slr0093 [O] COG2214 DnaJ-class molecular chaperone Length = 332 Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Query: 148 QAQLEVSLEQAYKGGSIRVQVGGKDVNVSIPPRSAEGTVIRIPGSS-GNGAGQDGDLLIS 206 +A L+++L +A++G R+ +G + V V IP + G+ +R+ G + GQ GDL ++ Sbjct: 157 EATLQLTLAEAFRGVEKRLNLGEEMVTVRIPAGAKNGSRVRVRGKGMASPYGQRGDLYLN 216 Query: 207 LHLLPHNIYEPDGGDLYGTVEIAPWQAVLGGEAKVPLPDGSSVKLKVPAGMAGGQTLRLS 266 L L PH ++ +G +L + IAP +AVLG + VP PDG V++KVPAG+ GQ+LRL Sbjct: 217 LQLTPHPFFQFEGDNLVCELAIAPDEAVLGADISVPTPDG-MVRMKVPAGVKSGQSLRLK 275 Query: 267 GKGLKRPNGANGDILFAVEIVIPAGLTEAEKKLYRQL 303 GKG P GD L + I P + E++ Y ++ Sbjct: 276 GKGWPNPKQGRGDQLVRLIITAPKNPSAIERECYEKI 312 >CC2772 [O] COG2214 DnaJ-class molecular chaperone Length = 314 Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 2/154 (1%) Query: 147 MQAQLEVSLEQAYKGGSIRVQVG-GKDVNVSIPPRSAEGTVIRIPGSSGNGAGQDGDLLI 205 ++A+L++ LE A KGG RV G+ ++V+IP + EG +R+ G G G GD LI Sbjct: 147 VKARLDIDLEDAIKGGKKRVAFSDGRTIDVTIPTGAQEGQTLRLKGQGSPGRGGQGDALI 206 Query: 206 SLHLLPHNIYEPDGGDLYGTVEIAPWQAVLGGEAKVPLPDGSSVKLKVPAGMAGGQTLRL 265 L + PH IY +G L + ++ AVLGG+ + P PDG +V L VP G GQTLRL Sbjct: 207 ELAIKPHPIYRREGEALVMDLPVSIPDAVLGGKVEAPTPDG-NVMLAVPKGSNSGQTLRL 265 Query: 266 SGKGLKRPNGANGDILFAVEIVIPAGLTEAEKKL 299 G+G+ G GD+L + + +P + + +K Sbjct: 266 KGRGMPDGKGKRGDLLARLVVTLPETVDQDLEKF 299 >all4643 [O] COG2214 DnaJ-class molecular chaperone Length = 333 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 3/164 (1%) Query: 148 QAQLEVSLEQAYKGGSIRVQVGGKDVNVSIPPRSAEGTVIRIPGSSGNG--AGQDGDLLI 205 +A + ++ +A+ G R +G + ++V IP + GT +R+ G Q GDL + Sbjct: 160 EATISLTFAEAFAGVQKRFNLGNETIDVRIPAGTKPGTRLRVRGKGQFNPMTQQRGDLYL 219 Query: 206 SLHLLPHNIYEPDGGDLYGTVEIAPWQAVLGGEAKVPLPDGSSVKLKVPAGMAGGQTLRL 265 + PH+ ++ +G +L + I P +A LG VP PDGS V +K+PAG+ GQ+LRL Sbjct: 220 KVEFQPHSFFQIEGDNLACEIPITPDEAALGASIDVPTPDGS-VNVKLPAGVRSGQSLRL 278 Query: 266 SGKGLKRPNGANGDILFAVEIVIPAGLTEAEKKLYRQLAEAGSF 309 GKG G GD V IV P +++ E++ Y ++ S+ Sbjct: 279 RGKGWPIAKGGRGDQFVKVAIVPPKDMSQQEREYYEKIRAIRSY 322 Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 4 NYYEALGVGEKASKQEIKKAYQKLAKKWHPDVNX-XXXXXXXXXXXXXXXXVLGNDEKRK 62 +YY LGV + A+ +EIK+A++KLA+K+HPDVN VL + +KRK Sbjct: 8 DYYAILGVSKTATPEEIKQAFRKLARKYHPDVNPGNKQAEASFKEVNEAYEVLSDADKRK 67 Query: 63 AYDE 66 YD+ Sbjct: 68 KYDQ 71 >sll1933 [O] COG2214 DnaJ-class molecular chaperone Length = 307 Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 8/171 (4%) Query: 147 MQAQLEVSLEQAYKGGSIRVQV-GGKDVNVSIPPRSAEGTVIRIPGSSGNGAGQDGDLLI 205 ++A L + LE+AY+GG R+++ G+ + V +P +G IR+ NG GDL + Sbjct: 140 VEANLTLPLEKAYRGGKERIRLEDGRSLEVEMPGGMGDGQRIRLKQQGING----GDLYL 195 Query: 206 SLHLLPHNIYEPDGGDLYGTVEIAPWQAVLGGEAKVPLPDGSSVKLKVPAGMAGGQTLRL 265 ++L PH ++ G D+ V + P +A+LGG +V DG VK+ VPAG+ GQ LRL Sbjct: 196 KINLSPHPLFTLQGTDIACQVPVTPSEAILGGAIEVMTIDGL-VKMTVPAGLKNGQKLRL 254 Query: 266 SGKGLKRPNGANGDILFAVEIVIPAGLTEAEKKLYRQLAEAGSFQAGPRRK 316 + KG G GD L + + IP + E +LYR++ E +F PR+K Sbjct: 255 AKKGFPNNQGDRGDQLVEIRVEIPPEPSPEELELYRRIREKETF--NPRQK 303 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,463,784 Number of extensions: 815008 Number of successful extensions: 1259 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 1195 Number of HSP's successfully gapped: 48 Length of query: 328 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 221 Effective length of database: 26,037,693 Effective search space: 5754330153 Effective search space used: 5754330153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 116 (49.3 bits)