BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0036.p (182 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0417 [J] COG1670 Acetyltransferases, including N-acetylases o... 96 3e-20 VCA0316 [J] COG1670 Acetyltransferases, including N-acetylases o... 96 3e-20 BH0443 [J] COG1670 Acetyltransferases, including N-acetylases of... 92 6e-19 VNG2078G [J] COG1670 Acetyltransferases, including N-acetylases ... 86 3e-17 YPO2830 [J] COG1670 Acetyltransferases, including N-acetylases o... 84 1e-16 >VCA0417 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 178 Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 2/169 (1%) Query: 6 KVYLRPLNGEDAELYYHMFYDSEARR--LTGTQKHITKEQIAAYIERKAEDDSGVLLLIA 63 K+ LR L EDAE +Y D E + L+ ++ IA ++ + I Sbjct: 7 KIRLRSLEVEDAESFYQWSGDREVTQFSLSAYAYPQSRSDIAKWLSEINSSSKTISFGIE 66 Query: 64 LKDNDETIGDIAIQDMDRNNRTANLRIAIGDEAHQGKGYGREALLLMLDYGFGILNLHRI 123 K++ + IG I + NR+ I IGD+A GKG G E L+ +YGF L LHRI Sbjct: 67 CKESQKLIGYAGISGISSLNRSGEYFILIGDKAFWGKGLGTEVTRLVTNYGFRELGLHRI 126 Query: 124 ELEVYAYNKRAAHVYESIGFVREGVRRQTLFYNHEYHDVIMMSMLENEY 172 EL Y N A YE+ G+ EG++R++ + N + D + MS+L E+ Sbjct: 127 ELTAYCDNVAAVKAYENAGYQHEGIKRESGYRNGRFMDKVQMSVLSREW 175 >VCA0316 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 301 Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 12/169 (7%), Positives = 38/169 (22%), Gaps = 2/169 (1%) Query: 6 KVYLRPLNGEDAELYYHMFYDSEARR--LTGTQKHITKEQIAAYIERKAEDDSGVLLLIA 63 + G + ++ +T + T+ +I A V Sbjct: 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66 Query: 64 LKDNDETIGDIAIQDMDRNNRTANLRIAIGDEAHQGKGYGREALLLMLDYGFGILNLHRI 123 + I + + + L I + + L IL ++++ Sbjct: 67 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 124 ELEVYAYNKRAAHVYESIGFVREGVRRQTLFYNHEYHDVIMMSMLENEY 172 + + + + + + + + Sbjct: 127 DNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 >BH0443 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 178 Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 1/141 (0%) Query: 39 ITKEQIAAYIERKAEDDSGVLLL-IALKDNDETIGDIAIQDMDRNNRTANLRIAIGDEAH 97 +T+ Q+A+YI+ D S + + + ETIG IA+ +DR N +A + + A Sbjct: 37 LTRSQLASYIDGANMDGSDQYIFKVKAVGSSETIGHIALGKVDRVNESARMGKVLVFPAA 96 Query: 98 QGKGYGREALLLMLDYGFGILNLHRIELEVYAYNKRAAHVYESIGFVREGVRRQTLFYNH 157 +GKG+ + +L F L+L+R+ L V+++N RA H YE IGF REG+ RQ Sbjct: 97 RGKGFAAPMIEELLRIAFEQLSLNRVSLGVFSFNVRAIHRYEKIGFQREGLLRQNTKVKG 156 Query: 158 EYHDVIMMSMLENEYRERYIS 178 EY D+I MSML+ E+ ER S Sbjct: 157 EYWDLIEMSMLKREWNERKYS 177 >VNG2078G [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 178 Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 2/172 (1%) Query: 4 GEKVYLRPLNGEDAELYYHMFYDSEARRLTGTQKHITKEQIAAYIERKAEDDSGVLLLIA 63 GE+V L P++ +D + + D G + +T+ + + E +A D+G + + Sbjct: 9 GERVDLCPVSEDDVDFLHDTINDPAVWPPVGARTPVTEREEREWYEEQASADNGTVNFVV 68 Query: 64 LKDNDETIGDIAIQDMDRNNRTANLRIAIGDEAHQGKGYGREALLLMLDYGFGILNLHRI 123 D IG + + +D N +A L + + E H G+GYG EA L Y F HR+ Sbjct: 69 AVDG-APIGSLGVHGVDDTNGSAELGVFLA-EDHWGEGYGTEAGRLATTYAFDQHRRHRV 126 Query: 124 ELEVYAYNKRAAHVYESIGFVREGVRRQTLFYNHEYHDVIMMSMLENEYRER 175 V+ N+ + V+E +GF REG R +F + EY DV +LE+E+R++ Sbjct: 127 FARVFEDNQASMRVWERLGFEREGTHRDAMFLHGEYLDVHCYGVLESEWRDQ 178 >YPO2830 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 181 Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 3/182 (1%) Query: 1 MLWGEKVYLRPLNGEDAELYYHMFYDSEARRLTGTQKHITKEQIAAYIERKAEDDSGVLL 60 M V LRPL ED + + ++ R + + ++ ++ D S Sbjct: 1 MSTTSSVRLRPLEREDLPFVHQLDNNASIMRYWFEEPYEAFVELCDLYDKHIHDQSERRF 60 Query: 61 LIALKDNDETIGDIAIQDMDRNNRTANLRIAIGDEAHQGKGYGREALLLMLDYGFGILNL 120 +I + IG + + +++ +R A +I I D HQGKGY A L ++YGF +LNL Sbjct: 61 II--ESQGTKIGLVELVEINHIHRRAEFQIII-DPTHQGKGYAGAAAKLAMEYGFSVLNL 117 Query: 121 HRIELEVYAYNKRAAHVYESIGFVREGVRRQTLFYNHEYHDVIMMSMLENEYRERYISTK 180 +++ L V N++A H+Y +GF EG +Q F N EY VI M + + +Y +Y + Sbjct: 118 YKLYLIVDKENEKAIHIYSKLGFEIEGELKQEFFINGEYRTVIRMCIFQPQYLAKYKTPS 177 Query: 181 VK 182 +K Sbjct: 178 IK 179 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,711,064 Number of extensions: 596441 Number of successful extensions: 979 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 989 Number of HSP's successfully gapped: 44 Length of query: 182 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 82 Effective length of database: 26,845,031 Effective search space: 2201292542 Effective search space used: 2201292542 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 112 (47.8 bits)