BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0032.p
         (187 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0244 [KR] COG0454 Histone acetyltransferase HPA2 and related ...    55   8e-08

>lin0244 [KR] COG0454 Histone acetyltransferase HPA2 and related
           acetyltransferases
          Length = 301

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 3/168 (1%), Positives = 17/168 (10%), Gaps = 16/168 (9%)

Query: 14  QLVMRRDSLSDLPDIVLPAGYRLRHFEPGDDMHWERLVELSFGWTRS-------FAEQIG 66
            + +          ++     +                 +      +             
Sbjct: 10  FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGIHTEGAYQAIYVDTPGLHM 68

Query: 67  GNAYFRAERVLFICC--GDIPAATATAWHEPKWGEACGYLHMVGVHPDHGGKGLGYAASL 124
                    +                   E         + +  +        L      
Sbjct: 69  EEKRAINRLMNKAASSSIGD-VELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVD 127

Query: 125 AALRQMREDGRRHAVLETDDFRLPAIKIYKKLNFNPVYEHDNHPKRWE 172
               +         +            +            D       
Sbjct: 128 NVQEKADLL---PHLQFLASQMNFLDIVPISAETGLNV--DTIAAIVR 170


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,368,706
Number of extensions: 738694
Number of successful extensions: 1052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1054
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 87
Effective length of database: 26,845,031
Effective search space: 2335517697
Effective search space used: 2335517697
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)