BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0030.p (276 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl1351 [G] COG0395 ABC-type sugar transport system, permease co... 134 2e-31 YPO0614 [G] COG0395 ABC-type sugar transport system, permease co... 126 3e-29 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 125 8e-29 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 124 1e-28 all5282 [G] COG0395 ABC-type sugar transport system, permease co... 123 3e-28 >Cgl1351 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 150/253 (59%), Gaps = 6/253 (2%) Query: 27 PIVYMGMNSMRTSVDFFKNP-GGFPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLT 85 P+V++ + S + + + P FP FNF N+ ++ + L F N++ + ++ Sbjct: 28 PLVFIVLTSFKQQSEIYTQPVTWFPSEFNFDNYANVFERVPFLNYFRNSIIITVILCLVK 87 Query: 86 MALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILM 145 + L + +AYA S + FP R+ ++LL+I+ + +PS ++ N+ L+SQ G D + +I+ Sbjct: 88 IILGVISAYALSILRFPGRNLVFLLVISALMVPSEVTVISNYALVSQLGWRDTYQGIIV- 146 Query: 146 WAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNST 205 + I+ FL+ + IP+E++EA+++D G+F+ LW++++P+S+P ++ ++ Sbjct: 147 -PLAGIAFGTFLMRNHFMSIPSELIEAARMDHCGHFRLLWKVLLPISMPTLVAFSMITVV 205 Query: 206 VWWNDLFTPLIFLQSDELKTMTVAVATILKRFD--TDYPLLLAGLFMTSLPPMLIYIGLQ 263 WN P + ++D T+ + + T+L+ + +++ ++A MT LP +++++ LQ Sbjct: 206 NEWNQYLWPFLMAETDNSATLPIGL-TMLQNNEGVSNWGPVMAATIMTMLPVLVMFLALQ 264 Query: 264 KYIRKGLVTGSVK 276 +Y+ KGL++G+VK Sbjct: 265 QYMIKGLISGAVK 277 >YPO0614 [G] COG0395 ABC-type sugar transport system, permease component Length = 272 Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 3/251 (1%) Query: 27 PIVYMGMNSMRTSVDFFKNPGGFPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLTM 86 P +M MNS +T + P P++F+F + + ++ R+F NTLF ++ Sbjct: 24 PFFFMIMNSFKTGSEIINAPNALPKNFSFNGYIQAFYSLNLGRIFLNTLFISVTVTLVNT 83 Query: 87 ALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILMW 146 LS AYA KM+ P R L++ +M +P++ F +P ++++ WG V+ F ++I+ Sbjct: 84 LLSAMVAYAIVKMNLPGREFWIKLILTSMMVPAVLFTIPTYMMLYSWGWVNTFQALIVPG 143 Query: 147 AITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNSTV 206 I+ + N+FLL ++ + N LEA++IDG G F +++++P+ P + T+AI Sbjct: 144 TIS--AYNIFLLVQFLKQVDNAYLEAARIDGAGEFTIFFKVVLPMIRPALATVAILTFMG 201 Query: 207 WWNDLFTPLIFLQSDELKTMTVAVATILKRFDTD-YPLLLAGLFMTSLPPMLIYIGLQKY 265 WND PL++++ D L T+ +A+ + TD L A M ++P +L++ LQ+ Sbjct: 202 SWNDFMGPLLYVRDDSLMTLQLALFKFVNDIPTDNLEQLWAMTTMIAVPVVLVFFFLQRN 261 Query: 266 IRKGLVTGSVK 276 K VK Sbjct: 262 FIKAFTGIGVK 272 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 3/251 (1%) Query: 27 PIVYMGMNSMRTSVDFFKNPGGF-PESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLT 85 P V+M + +T P F P+ NF ++ F +LR N++ V + Sbjct: 33 PFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTLGQ 92 Query: 86 MALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILM 145 M AAYAF+++ F R L+LL +ATM +P+ ++P F+LM Q+G +D + +I+ Sbjct: 93 MLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVP 152 Query: 146 WAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNST 205 A+ S+ FLL GIP E+ EA+ +DG +F ++I+PL+ P TL I Sbjct: 153 -ALFSVFGT-FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFM 210 Query: 206 VWWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGLQKY 265 WN PLI S E+ T+ + ++ + R+ T+Y L++AG+ ++ +P + +Y+ QKY Sbjct: 211 QSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKY 270 Query: 266 IRKGLVTGSVK 276 +G+ +K Sbjct: 271 FIQGMAMSGMK 281 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 4/251 (1%) Query: 27 PIVYMGMNSMRTSVDFFKNPGG-FPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLT 85 P ++M ++S++T + K P +PE+F NF L+ + D NTL V +F Sbjct: 29 PFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSF-FG 87 Query: 86 MALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILM 145 + L+ A Y F+K F ++ L+ L++ATM IP ++P +LL++ GL + ++L Sbjct: 88 LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLP 147 Query: 146 WAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNST 205 + + +FL M I +++LEA+++DG F WR++IP+S P + I Sbjct: 148 GLVGAFG--IFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFI 205 Query: 206 VWWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGLQKY 265 WN PLI ++ T++V + + ++ ++Y L +AG +P +LI++ QKY Sbjct: 206 AGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKY 265 Query: 266 IRKGLVTGSVK 276 I KG +K Sbjct: 266 ILKGFNVSGMK 276 >all5282 [G] COG0395 ABC-type sugar transport system, permease component Length = 275 Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 142/231 (61%), Gaps = 12/231 (5%) Query: 51 ESFNFLNFEALYLQFDVLRLFGN-TLFCVAV-AF-VLTMALSIPAAYAFSKMSFPYRSAL 107 +++F N+ + + L F N TL +AV AF ++T AL A YA +++ F R L Sbjct: 51 NNWSFANYRDAWQRGKFLLAFANSTLVAIAVTAFQIVTSAL---AGYALARLKFRGRQTL 107 Query: 108 YLLMIATMTIPSITFIVPNFLLMSQWG-LVDHFLSVILMWAITSISSNVFLLTSQMRGIP 166 L+++AT+ IP ++P FL++ +WG L++ + ++IL A+ +FLL + IP Sbjct: 108 LLIVLATLIIPFQLLVIPIFLVL-KWGHLINTYGALILPTAVNGFG--IFLLRQYFQTIP 164 Query: 167 NEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNSTVWWNDLFTPLIFLQSDELKTM 226 E+ EA+ IDG Q LW++++PL+ P ++TL +F WNDLF PL+F EL+T+ Sbjct: 165 VELEEAATIDGANRLQILWQVMLPLARPALVTLFLFTFIAEWNDLFKPLVFTTKPELRTV 224 Query: 227 TVAVATILKRFDTDYPLLLAGLFMTSLPPMLIY-IGLQKYIRKGLVTGSVK 276 +A+A ++F ++PL++A + + ++P M+++ IG +++IR G+ T +K Sbjct: 225 QLALAEFQEQFTNNWPLMMAAVTIATVPVMVLFLIGQRQFIR-GIATTGIK 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,561,914 Number of extensions: 623349 Number of successful extensions: 2480 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 2362 Number of HSP's successfully gapped: 159 Length of query: 276 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 171 Effective length of database: 26,268,361 Effective search space: 4491889731 Effective search space used: 4491889731 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)