BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0029.p (290 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 115 1e-25 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 112 1e-24 alr0789 [G] COG1175 ABC-type sugar transport systems, permease c... 107 3e-23 STM1121 [R] COG3729 General stress protein 106 5e-23 TM1121 [G] COG1175 ABC-type sugar transport systems, permease co... 106 5e-23 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 143/290 (49%), Gaps = 7/290 (2%) Query: 4 RTKQIWSGYLSLAPAFLALAVFIFYPMVNTFLHSFTKWD-GNTARWIGLSNYKFIFTNGE 62 R K ++ + L P L +FI P++ + SFT WD +T + G NYK +F + E Sbjct: 6 RKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPE 65 Query: 63 LWTLLRNNAIFXXXXXXXXXXXXXXXXXXFEQMPGWR-FFRSLYYIPTILSSVVVGLLMK 121 W RN F Q R FFR++Y++P I S V V L+ K Sbjct: 66 FWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWK 125 Query: 122 SMFSPS-GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXX 180 +F+PS G++N ++ +G+ G + WL TA + +I W+ Sbjct: 126 WLFNPSYGLINYFLSLIGIAGPN--WLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNI 183 Query: 181 XPEIFESASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGL 240 P +E+A++DGA ++LF I IP L PT + T+ ++I F +F V +T GGP Sbjct: 184 SPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSF-QVFDQVMIMTEGGPSG 242 Query: 241 ETTPIDYMIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSRFEN 290 T + IY AF+ ++GYASA+S +LF ++ ++ +Q +L R+ N Sbjct: 243 ATMTLVQNIYNHAFRY-FEMGYASAMSWILFIVIFIITIIQNKLQKRWSN 291 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 7/279 (2%) Query: 12 YLSLAPAFLALAVFIFYPMVNTFLHSFTKWDGNTAR---WIGLSNYKFIFTNGELWTLLR 68 YL L PA + L +FYP + F SFT+++ + + W+GL+N++ ++ + W R Sbjct: 17 YLFLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWRDRVFWLTFR 76 Query: 69 NNAIFXXXXXXXXXXXXXXXXXXFEQ-MPGWRFFRSLYYIPTILSSVVVGLLMKSMFSPS 127 + ++ Q + G +FR YY P I S VV G+ K++++ + Sbjct: 77 HTLLYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVAGIAWKALYASN 136 Query: 128 GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXXXPEIFES 187 G++NQ + LG G WL A ++ W+ E++E+ Sbjct: 137 GILNQILALLGFSDG-IPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGLQAIPQELYEA 195 Query: 188 ASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGLETTPIDY 247 +IDGA W++ + I IP + P V + I + +F VY +T+GGP + + Y Sbjct: 196 GAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISA-LKVFEEVYIMTQGGPLNASKTVVY 254 Query: 248 MIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSS 286 +Y +AFQ ++ YASA+ +VLF ++ S + L+LS Sbjct: 255 YVYERAFQD-LEMNYASAIGLVLFLVIFIFSVINLKLSG 292 >alr0789 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 15/272 (5%), Positives = 31/272 (11%), Gaps = 7/272 (2%) Query: 15 LAPAFLALAVFIFYPMVNTFLHSFT--KWDGNTARWIGLSNYKFIFTNGELWTLLRNNAI 72 A + V + T A + G + + Sbjct: 21 RELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEG 80 Query: 73 FXXXXXXXXXXXXXXXXXXFEQMPGWR-FFRSLYYIPTILSSVVVGLLMKSMFSPSGVVN 131 F + SL T+ + G+ + Sbjct: 81 FFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAF 140 Query: 132 QWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXXXPEIFESASID 191 + + I S I Sbjct: 141 YHRLTQCKNV--RQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGIL 198 Query: 192 GAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGLETTPIDYMIYI 251 + L + + + Sbjct: 199 LWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQ-PVMSLTSSLIAVREHKAGEPVGYGG 257 Query: 252 KAFQSPDQLGYASALSIVLFAIVLFVSWLQLR 283 D Sbjct: 258 TWVSERD-TRLGVVAMGYGDGYPRAAPSGTPV 288 >STM1121 [R] COG3729 General stress protein Length = 55 Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 0/280 (0%), Positives = 0/280 (0%), Gaps = 7/280 (2%) Query: 12 YLSLAPAFLALAVFIFYPMVNTFLHSFTKWD--GNTARWIGLSNYKFIFTNGELWTLLRN 69 + K Sbjct: 21 AGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNR 80 Query: 70 NAIFXXXXXXXXXXXXXXXXXXFE-QMPGWRFFRSLYYIPTILSSVVVGLLMKSMFSPS- 127 Sbjct: 81 140 Query: 128 GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXXXPEIFES 187 Sbjct: 141 -- 198 Query: 188 ASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGLETTPIDY 247 Sbjct: 199 258 Query: 248 MIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSR 287 Sbjct: 259 - 297 >TM1121 [G] COG1175 ABC-type sugar transport systems, permease components Length = 302 Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 129/280 (46%), Gaps = 7/280 (2%) Query: 12 YLSLAPAFLALAVFIFYPMVNTFLHSFTKWD--GNTARWIGLSNYKFIFTNGELWTLLRN 69 YL L P F+ + +FI++P V + SF + GN ++GL N++ +F + E ++ Sbjct: 21 YLLLLPTFVIITLFIYWPAVYSLRLSFYRITPFGNRMVFVGLRNFQRLFQSPEYLNAIKV 80 Query: 70 NAIFXXXXXXXXXXXXXXXXXXFE-QMPGWRFFRSLYYIPTILSSVVVGLLMKSMFSPS- 127 ++ +PG R FR+L + P +S + G+L + +P Sbjct: 81 TVVYVLASLFLTIFLAFFIALLLNMNLPGNRIFRALIFTPYAISPAIAGVLWSFLLNPVV 140 Query: 128 GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXXXPEIFES 187 G VN + L G EWL P A + +I W+T E+ E+ Sbjct: 141 GHVNYILSKLF--GLQVEWLTTKPYALIAVIIATVWKTLPFDIIFYLAGLQDIPQELIEA 198 Query: 188 ASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGLETTPIDY 247 + ++GA W R + IV P L P Y + N++ F+++ T+GGPG TT + Y Sbjct: 199 SLVEGANSWARTWKIVFPLLSPITFYLVIMNLVSFMFSSFAIIDVTTKGGPGNYTTTLIY 258 Query: 248 MIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSR 287 +Y+ AF ++G A+A S++LF I+ V+ + R Sbjct: 259 RLYLDAFAF-QKIGPAAAQSVILFLIMAIVTIFYFKFGER 297 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,004,971 Number of extensions: 750723 Number of successful extensions: 2662 Number of sequences better than 1.0e-05: 134 Number of HSP's gapped: 2376 Number of HSP's successfully gapped: 137 Length of query: 290 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 185 Effective length of database: 26,268,361 Effective search space: 4859646785 Effective search space used: 4859646785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)