BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0028.p (463 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 72 1e-12 TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic ... 71 3e-12 all1027 [G] COG1653 ABC-type sugar transport system, periplasmic... 65 2e-10 lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic... 63 1e-09 Cgl1352 [G] COG1653 ABC-type sugar transport system, periplasmic... 59 2e-08 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/311 (25%), Positives = 133/311 (42%), Gaps = 40/311 (12%) Query: 83 KRKEDFYIYKAIKRYEEANPGITIDIQDIPDGTNAMTKFQTAGIAKNGPDITNLWS---- 138 K E Y + +K +E+ +P I I I+ + + + K + + PDI WS Sbjct: 42 KEPEKSYFEEVVKEFEKDHPDIDIQIEAVLNDSYK-DKIKVMLGTTSPPDIYFSWSDEFA 100 Query: 139 -----GSYTLDLKQYLQ---PLDQYLKQEQIDALTGWNAATENFADNGTIYGVPDGSDGT 190 G+ LDL Y + L Q QI T N YGVP D Sbjct: 101 FKFIRGNKALDLSSYYKNDTDWSSQLVQSQITPFTYENKQ----------YGVPWQMDAK 150 Query: 191 IGILYNKELFADAGIDPEKLDLNNAKQFMDMLQKIKDKGFTPIGMGDDGDFV--YFLDYW 248 YNK++F +DP K + +D+ +K+K+ G+TPI G + +++ Sbjct: 151 -SFFYNKDIFQKLNLDPPK----TWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTL 205 Query: 249 FAQMVGTAGINDITNGKM-KFNNPELLNVVQQYVQL--YKNGFVT---NDQPQTQFYNGK 302 +MV N K +F + + +++ +L Y N V ++ + QF +GK Sbjct: 206 NQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQELMPYFNKHVNSVDHEYVRQQFKSGK 265 Query: 303 VALIFGGFGYIKDARAALGDKLGMMKIPDFSESALVHNGGVGGSGADFVVSKSSEHPEEA 362 A+I+ IK LGM P+ S + + G+ F++S ++HP+EA Sbjct: 266 SAMIYAETAEIKLVEPV---NLGMFPFPEISGQK-GSSEALTGAPEGFMISSRTKHPKEA 321 Query: 363 LKFIMFLLSEE 373 ++F+ FL S+ Sbjct: 322 MEFLQFLTSKR 332 >TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 94/342 (27%), Positives = 150/342 (43%), Gaps = 60/342 (17%) Query: 65 KLVFWNTSY-PTIDANNKTKRKEDFYIYKAIKRYEEANPGITIDIQDIPDGTNAMTKFQT 123 K+VFW S PT DF I I RYEE NP + I +D+P K Sbjct: 22 KIVFWTMSLKPTFT---------DF-IQGIIDRYEELNPDVEIVWEDVPWDV-LQQKLLA 70 Query: 124 AGIAKNGPDITNLWSGSYTLDL--KQYLQPLDQYLKQEQIDALTGWNAATENFADNGTIY 181 A + N PD+ NL + +T++ K+ L PL+ L +E I+ ++ + IY Sbjct: 71 AFSSGNPPDVVNL-NAQWTIEFAQKKVLFPLNDLLPEEVINQY--FDNMIKGLTWKDGIY 127 Query: 182 GVPDGSDGTIGILYNKELFADAGIDPEKLDLNNAKQFMDMLQKIKDK----GFTPIGMGD 237 G+P + + I YNKE+F AG+DP K + + IK+K G P D Sbjct: 128 GIPWYTAVDV-IFYNKEIFEKAGLDP-KYPPRTWDEILLYSVLIKEKTGKYGALPTIFQD 185 Query: 238 DGDFVYFLDYWFAQMVGTAGINDIT---NGKMK---FNNPELLNVVQQYVQLYKNGFVTN 291 + + G+N T N ++K F+ PE + + ++ LYK ++ + Sbjct: 186 P-----------SAIFNWDGLNLYTVDENNRIKEVLFDRPEYAHTLNKWATLYKQKYIPS 234 Query: 292 DQPQ-------TQFYN-GKVALIFGGFGY---IKDARAALGDKLGMMKIPDFSESALVHN 340 + Q T+ Y G++A++ G + +K + +K + IP Sbjct: 235 EIVQGGEWTRATELYQAGELAMLITGVQFADRVKWNAPEIYEKSDVAPIP-------APK 287 Query: 341 GGVGGSG--ADFVVSKSSEHPEEALKFIMFLLSEEEQIARFK 380 GV SG + V + S++P+EA KF F+ + E QIA K Sbjct: 288 PGVRMSGWYSTLNVVRGSKNPKEAAKFAAFVANLENQIAFCK 329 >all1027 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 432 Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/340 (25%), Positives = 137/340 (40%), Gaps = 65/340 (19%) Query: 89 YIYKAIKRYEEANPGITIDIQDIPDGTNAM-TKFQTAGIAKNGPDITNLWSG-SYTLDLK 146 Y I +E NPGI ++ D+P AM K TA AK PD+ NL + L + Sbjct: 59 YFQSLIANFETQNPGIKVNWVDVPWA--AMENKILTAVSAKTPPDVVNLNPDFASQLAGR 116 Query: 147 QYLQPLDQYLKQEQIDALTG--WNAATENFADNGTIYGVPDGSDGTIGILYNKELFADAG 204 LD + QE + W A+T N G +GVP + I YN +L AG Sbjct: 117 NAWLDLDTKVPQEARSSYLPNIWKASTLN----GKSFGVPWYLTTRLTI-YNTDLLKQAG 171 Query: 205 IDPEKLDLNNAKQFMDMLQKIKDKGFTPIGMGDDGDFVYFLDYW----------FAQMVG 254 I + Q+IKDK G + +F+ + F QM Sbjct: 172 ISKPPATY---AELAQAAQQIKDK---------TGKYAFFVTFVPQDSGEVLQSFVQMGA 219 Query: 255 TAGINDITNGKMKFNNPELLNVVQQYVQLYKNGFVTNDQPQTQ--------FYNGKVALI 306 T + D T GK FN+P+ Q +V LYK G + + TQ + +G+ A + Sbjct: 220 T--LVD-TEGKAAFNSPQGKAAFQYWVDLYKKGLLPKEA-LTQGHRHAIDLYQSGETAFL 275 Query: 307 FGGFGYIKDARAALGDKLGMMKIPDFSESALVHNGGVGGSG------ADFVVSKSSEHPE 360 G ++K P ++++ + G +G + VV + ++ P+ Sbjct: 276 ASGPEFLKTI---------TTNAPKVAQASAIAPQLTGDTGKKNVAVMNIVVPRDTKQPD 326 Query: 361 EALKFIMFLLSEEEQIARFKDGYGKLLNVKNVDVSKLTDD 400 A+KF +F+ ++E Q+A + K NV L D Sbjct: 327 AAVKFALFVTNDENQLA-----FAKAANVLPSTTKALADS 361 >lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 485 Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 33/346 (9%) Query: 82 TKRKEDFYIYKAIKRYEEANPGITIDIQDIPDGTNAMTKFQTAGIAKNGPDITNLWSGSY 141 T +K+ + K + +Y E G+ +++ I D + + QT + DI +G + Sbjct: 42 TPQKDTEEVMKEVNKYTEEKIGVKVEMTQI-DWGDYGKRMQTVINSGENFDIAYSAAGEF 100 Query: 142 -TLDLKQYLQPLDQYLKQEQIDALTGWNAAT-ENFADNGTIYGVPDGSDGTIG----ILY 195 + K PL++YL +E N E +G IYGVP S+ +G ++ Sbjct: 101 VSYSQKGAFLPLNKYLDKEGKKMKAELNEVLWEGATIDGNIYGVP--SNKEVGEQQVYVF 158 Query: 196 NKELFADAGIDPEKLDLNNAKQFMD---MLQKIKDK--GFTPIGMGDDGDFVYFLDYWFA 250 NK L +D K+D++ K F D ML+ IK+ TPIG D + DY Sbjct: 159 NKNL-----VDKYKMDISKVKNFSDLEPMLKTIKENEPSITPIGGNKDFKPAFSYDYLID 213 Query: 251 QMVGTA-GINDITN-GKMK--FNNPELLNVVQQYVQLYKNGFVTND-----QPQTQFYNG 301 V +N + GK+ + P+ L ++ Y+ G+VT D P + Sbjct: 214 NAVPLPFAVNQYEDTGKIVNFYEQPDTLETLKSLHSFYQKGYVTKDIATSTDPWSYDKEN 273 Query: 302 KVALIFGGFGYIKDA-RAALGDKLGMMKIPDFSESALVHNGGVGGSGADFVVSKSSEHPE 360 I Y ++ G K ++ P +E+ ++ N V +GA VS +S+HPE Sbjct: 274 WFVRIEKYQPYAENIWDKNTGGKYKVVTQP-IAETPIIKNNSV--TGAIQAVSVTSQHPE 330 Query: 361 EALKFIMFLLSEEEQIARFKDGYGKLLNVKNVDVSKLTDDPLIVQQ 406 EA+KF + LL+ +E + D + + K +D K+ D P V++ Sbjct: 331 EAVKF-LDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQDLPARVER 375 >Cgl1352 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 438 Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/311 (24%), Positives = 127/311 (40%), Gaps = 29/311 (9%) Query: 67 VFWNTSYPTIDANNKTKRKEDFYIYKAIKRYEEANPGITIDIQDIPDGTNAMTKFQTAGI 126 + W +++P AN+K E I R+E NP + + + D G N Q Sbjct: 47 IVWWSNHP---ANSKDVELE------LISRFEAENPDLKVQLVDA--GANYAEVSQKFNA 95 Query: 127 AKNGPDITNLWSGS----YTLDLKQYLQPLDQYLKQEQIDALTGWNAATENFADNGTIYG 182 A +G D+ +L S + + +D+ K+ ID T ++ +++ G YG Sbjct: 96 ALSGGDLPDLVVLSDTEWFNFAINGATVNIDEVAKRNNIDTSTYVDSLFNDYSHEGGHYG 155 Query: 183 VPDGSDGTIGILYNKELFADAGID---PEKLDLNNAKQFMDMLQKIKDKGFTPIGMGDDG 239 +P + T+ YNK+L+A AG++ PE + ++ LQ+ D GF G GD Sbjct: 156 LP-FARSTVLFYYNKDLWAKAGLEDRGPESWE--EFSEWGPKLQEAMDSGFAH-GWGDAT 211 Query: 240 DFVYFLDYWFAQMVGTAGINDITNGKMKFNNPELLNVVQQYVQLYKNGFVTNDQPQT-QF 298 + +L + F + + G N + + PE + V+ GF T T +F Sbjct: 212 N---YLSWTFEGPMWSLGGNYSEGWESRLTTPETIRAVEWLKSTVDEGFATVSTDVTNEF 268 Query: 299 YNGKVALIFGGFGYIKDARAALGDKLGMMKIPDFSESALVHNGGVGGSGADFVVSKSSEH 358 G + G + A G+ +P+ + GG+G S + Sbjct: 269 ATGLIGSCIQSTGDLSSVAGAASFDWGVAALPNPTGEGACP---TGGAGLGIPSGISEQR 325 Query: 359 PEEALKFIMFL 369 + ALKFI FL Sbjct: 326 QDNALKFIDFL 336 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,236,045 Number of extensions: 1373420 Number of successful extensions: 3144 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 3149 Number of HSP's successfully gapped: 13 Length of query: 463 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 353 Effective length of database: 25,691,691 Effective search space: 9069166923 Effective search space used: 9069166923 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 118 (50.1 bits)