BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0026.p (524 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1910 [T] COG4753 Response regulator containing CheY-like recei... 94 5e-19 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 87 8e-17 SPy1556 [T] COG4753 Response regulator containing CheY-like rece... 84 4e-16 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 84 4e-16 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 82 2e-15 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 3 VMIVEDEILVRLGLRKSIPWSSLGLELVCEAKDGAEACDMFTRHLPDIVLVDIELPKMDG 62 VMIV+DE +VR GL+ I W G ++ A++G E + + PD+++VDI +P++DG Sbjct: 4 VMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPEVDG 63 Query: 63 LKFIRFAKTHGSGTHFIVLTCHQDMKYMREAIKLQVTDFILKSTLDMKELCDILQNI 119 L I + S HFI+L+ H D Y ++A+ Q D++LK LD EL D L+ + Sbjct: 64 LSLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKP-LDEDELIDSLKKV 119 Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%) Query: 419 IVVLVKQYIKNHLQQEISLQEIADTFHINRSYLSRLFREVSQMSFTEFVLYEKTELAIVM 478 I ++ K Y KN + L+ +A F+ NR+YL +LF+ + F ++ + E + Sbjct: 403 IALIHKDYAKN-----LRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKRL 457 Query: 479 MQSGKSLTEISEKLGYLNLSSFTRMFKKVRGASPSLF 515 +Q G + E++EK+GY N+ F R FKK G SPS F Sbjct: 458 LQKGYKVYEVAEKIGYANVDYFHRKFKKYVGVSPSTF 494 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 KVMIVEDEILVRLGLRKSIPWSSLGLELVCEAKDGAEACDMFTRHLPDIVLVDIELPKMD 61 KV++ +DE VR GL+ I W G E+ EA +G +A + PD+V+ DI +P D Sbjct: 3 KVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFD 62 Query: 62 GLKFI-RFAKTHGSGTHFIVLTCHQDMKYMREAIKLQVTDFILKSTLDMKELCDILQNIT 120 GL+ I + +T T FI+++ + D Y ++A++ DF+LK +D EL L I Sbjct: 63 GLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKP-IDQDELEAAL--IK 119 Query: 121 LERLRDTSVDKAGLQDAAAAMPAEDFYRSWLNGSLRDSGQIRQQLAQMNVN 171 L D +KA D + + F S G + ++R+ A++N+N Sbjct: 120 LAATLDQ--EKATNSDQEKVLLDQIFIHSL--GENKKENEVRRWAAKLNIN 166 Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 423 VKQYIKNHLQQEISLQEIADTFHINRSYLSRLFREVSQMSFTEFVLYEK-TELAIVMMQS 481 VK YI+NH + ISL+ IA F++N Y+ +LF++ + F E++L + E ++ Q+ Sbjct: 426 VKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQT 485 Query: 482 GKSLTEISEKLGYLNLSSFTRMFKKVRGASPSLFVN 517 + E++E++G+ + F F+K+ +P+ + N Sbjct: 486 DMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRN 521 >SPy1556 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 246 Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 61/102 (59%) Query: 3 VMIVEDEILVRLGLRKSIPWSSLGLELVCEAKDGAEACDMFTRHLPDIVLVDIELPKMDG 62 ++IVEDE LVR G+R + +S ++ V EA++G A D+F + DIVL DI +PK++G Sbjct: 4 LLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNG 63 Query: 63 LKFIRFAKTHGSGTHFIVLTCHQDMKYMREAIKLQVTDFILK 104 ++ K TH + LT + D Y A+KL D++LK Sbjct: 64 IQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLK 105 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 10/165 (6%) Query: 3 VMIVEDEILVRLGLRKSIPWSSLGLELVCEAKDGAEACDMFTRHLPDIVLVDIELPKMDG 62 V+IV+DE L+R G+ W G ++V EA +G +A ++ +++ P IV+ DI +P MDG Sbjct: 4 VLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHIVMTDIVMPVMDG 63 Query: 63 LKFIRFAKTHGSGTHFIVLTCHQDMKYMREAIKLQVTDFILKSTLDMKELCDILQNITLE 122 + ++ K IVL+ ++ +Y+R V D+ILK L+ K+L TL Sbjct: 64 IDLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLK-----TLS 118 Query: 123 RLRDTSVDKAGLQDAAAAMPA-EDFYRSWLNG----SLRDSGQIR 162 +R A + + A+P+ D + LNG S D+G+ R Sbjct: 119 EVRGKIPALAKVDSPSRAVPSISDQFEKILNGHAPLSQDDTGEKR 163 Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 426 YIKNHLQQEISLQEIADTFHINRSYLSRLFREVSQMSFTEFVLYEKTELAIVMMQSGK-S 484 YI+ H + +SL ++A+ FH N SYLS FR+ F+E++ + A ++S Sbjct: 408 YIEEHHSEPLSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIP 467 Query: 485 LTEISEKLGYLNLSSFTRMFKKVRGASPSLF 515 ++EI +GY + S F ++FKK G PS + Sbjct: 468 ISEIYALVGYSDHSYFCKVFKKRTGMPPSRY 498 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 13/204 (6%) Query: 2 KVMIVEDEILVRLGLRKSIPWSSLGLELVCEAKDGAEACDMFTRHLPDIVLVDIELPKMD 61 KV+I++DE V GL+K I W +LG E V EA +G D+ P IVL DI +P M Sbjct: 3 KVVIIDDEEHVVRGLKKIISWKALGCECVGEAANGRRGLDIVRETSPHIVLTDIYMPIMY 62 Query: 62 GLKFIRFAKTHGSGTHFIVLTCHQDMKYMREAIKLQVTDFILK-STLDMKELCDILQNIT 120 GL I+ + G ++L+ + + ++ R+A++L +TD++ K +++D E +L+ + Sbjct: 63 GLDMIQILREDGFDGEVVILSGYSEFEHARKAMQLNITDYLSKPASVDTIET--VLKRV- 119 Query: 121 LERLRDTSVDKAGLQDAA------AAMPAEDFYRSWLNGSLRDSGQIRQQLAQMNVNRPV 174 + +L + + LQ+ + ++ +S L G LR+ G+I ++ Sbjct: 120 INKLEEKQRQQGYLQELTNKVKRYEPLVETEWMKSLLTGRLRN-GEIPEEFLAKITKWKD 178 Query: 175 GRFIACVMQLDVRPPADHKLSDAD 198 + IAC + D P + +L AD Sbjct: 179 QQHIACSLTYD--GPQNKELKPAD 200 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 426 YIKNHLQQEISLQEIADTFHINRSYLSRLFREVSQMSFTEFVLYEKTELAIVMMQSGKSL 485 YI+ HL + I+LQ+IAD +I+R+YL ++F++V SF +V + E A M+Q G L Sbjct: 432 YIEKHLAENITLQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFL 491 Query: 486 T-EISEKLGYLNLSSFTRMFKKVRGASP 512 E+SEK+GY+N + FT MFKK G +P Sbjct: 492 IYEVSEKVGYVNPAYFTTMFKKYTGYTP 519 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 35,145,454 Number of extensions: 1387557 Number of successful extensions: 5169 Number of sequences better than 1.0e-05: 114 Number of HSP's gapped: 6030 Number of HSP's successfully gapped: 124 Length of query: 524 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 413 Effective length of database: 25,576,357 Effective search space: 10563035441 Effective search space used: 10563035441 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 118 (50.1 bits)