BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0025.p (491 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2727 [T] COG2972 Predicted signal transduction protein with a ... 118 2e-26 BS_yesM [T] COG2972 Predicted signal transduction protein with a... 118 3e-26 lin2119 [T] COG2972 Predicted signal transduction protein with a... 112 1e-24 BH0792 [T] COG2972 Predicted signal transduction protein with a ... 107 4e-23 BH1122 [T] COG2972 Predicted signal transduction protein with a ... 99 2e-20 >BH2727 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 6/216 (2%) Query: 268 ENEKRKLELHRLQEQMRPHFWHNSLNSLRFLAVLNGDNQMAEAILSLTRMLDYTLRNTDV 327 E ++RK EL LQ Q+ PHF +N+L S++F+ + AE IL+L +L L + + Sbjct: 380 EQKQRKAELKALQHQINPHFLYNTLTSVKFMVQQGDKEKAAETILALITLLQNALGHINE 439 Query: 328 LYSTLEEEKDYAMSFVRFQEIRSMQQIRVNLELDERAMQAQIPKFTLQLILENSIMHGFA 387 T+E+E +V + R ++I+V+ + + Q+PK LQ +EN+ H F Sbjct: 440 TI-TVEQELTIIKKYVLINQARYGERIKVHYFVSPECLPYQMPKLVLQPFIENAFFHAFN 498 Query: 388 APFDKEPWIRVVAETEDELLILRITDNGNGMDQATLQRLFQPERKQHRARRSSGLSLINL 447 KE +I+V+A +DE L+ I DNG+GMD L+++ R + + G+ + N+ Sbjct: 499 KK--KEGFIQVMAAVKDEKLLFEIVDNGDGMD---LEKVSLSSRYHGKRQLFHGIGVRNV 553 Query: 448 QQRFRLEYGSGFGIRVASEHGQFTEVTMTLPLMTTD 483 +R +L YG +G+ + S G T V + LPL+T + Sbjct: 554 HERIQLLYGKDYGVEMTSNIGNGTVVHVILPLLTNE 589 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 106/417 (25%), Positives = 184/417 (44%), Gaps = 45/417 (10%) Query: 76 SLGLLVIEMNGSLIERLLNRAQIHAQNAVFIVSGEGQLLFRNENMLKPLQEDAELFSTAT 135 LG+++I++N + R + + + + I G L++ A + A Sbjct: 188 GLGMVLIQVNVKQMIRDVPKDWGDSVGDIMIADQGGNLVY-------TAHASAHVPEAAK 240 Query: 136 QILKRGDDHGTQNISWAGSPYYLIYKQISSTPWTMFSLIPMYSFHSDSMNIWHTTAITTA 195 + LK G I G Y++ Y Q S W+ +++IP D M + + T Sbjct: 241 ETLKHP---GYDLIKKNGKRYFISYLQSSYQNWSYYNVIPF-----DQM-FAKISFMKTV 291 Query: 196 ISVVLIAAFFCVLYL-------KVTLPIAQLSRIVRKAGQGQTPETYAYKGFKEIETLNR 248 I + FFCV+ L +T PI QL + K+ Q E E Sbjct: 292 IGTCFLL-FFCVVLLFGRKIANSITEPIEQLVTAM-KSVQHSGIEAGVSLSLPEHTQDEA 349 Query: 249 GXXXXXXXXXXXXXTIKRGENEKRKL-----ELHRLQEQMRPHFWHNSLNSLRFLAVLNG 303 G EN +++L EL LQ Q+ PHF +N+L S+ +LA N Sbjct: 350 GMLNRHFTVMMKRINELMEENVEKQLIIKETELKALQAQINPHFLYNTLESINWLAKANQ 409 Query: 304 DNQMAEAILSLTRMLDYTLR-NTDVLYSTLEEEKDYAMSFVRFQEIRSMQQIRVNLELDE 362 Q+++ + SL +L ++ D++ T++EE D ++ Q R ++++ L++D+ Sbjct: 410 QKQISKMVESLGFLLRNSIHMKKDIV--TIQEEADIVRHYMTIQRFRFEERLKFTLDIDD 467 Query: 363 RAMQAQIPKFTLQLILENSIMHGFAAPFDKEPWIRVVAETEDELLILRITDNGNGMDQAT 422 IPK TLQ + EN+I + PF + IR+ A+ + + + DNG GMD Sbjct: 468 EVKHCLIPKLTLQPLAENAIQYAL-EPFTRPCAIRIQAKKAKGCVCITVEDNGPGMDGRI 526 Query: 423 LQRLFQPERKQHRARRSSGLSLINLQQRFRLEYGSGFGIRVASEHGQFTEVTMTLPL 479 L+ + G+ L N+++R L +G +G+R+ SEH + T + +T+P Sbjct: 527 LE-----------STGGRGIGLWNIRERISLTFGEPYGLRIHSEHEKGTRIVITIPC 572 >lin2119 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 7/211 (3%) Query: 268 ENEKRKLELHRLQEQMRPHFWHNSLNSLRFLAVLNGDNQMAEAILSLTRMLDYTLRNTDV 327 E E++K L LQ QM+PHF +NSL ++R A + G + ++ I L +L YT + ++ Sbjct: 367 EMEEQKARLKALQGQMQPHFLYNSLEAIRMNARVEGAKETSDMIYQLATLLRYTANHREI 426 Query: 328 LYSTLEEEKDYAMSFVRFQEIRSMQQIRVNLELDERAMQAQIPKFTLQLILENSIMHGFA 387 +TL EE +Y +VRF E+R Q I++ + +++R IP+F LQ ++EN + + Sbjct: 427 --TTLGEEINYVKQYVRFMEMRHEQPIKLEIHIEKRFNHTHIPRFALQPLIENFFKYAYK 484 Query: 388 APFDKEPWIRVVAETEDELLILRITDNGNGMDQATLQRLFQPERKQHRARRSSGLSLINL 447 ++ P + + E+ L +I DNG GMD L+ + + +S + L NL Sbjct: 485 E--NQHPVVTITVTAENNNLQFQIKDNGKGMDAEKLKEV---QATIESKAETSHIGLANL 539 Query: 448 QQRFRLEYGSGFGIRVASEHGQFTEVTMTLP 478 +R +L YG + + + S+ + T + +P Sbjct: 540 NKRLQLLYGEAYSLTITSKPNEGTIILFQVP 570 >BH0792 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 587 Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 114/209 (54%), Gaps = 5/209 (2%) Query: 275 ELHRLQEQMRPHFWHNSLNSLRFLAVLNGDNQMAEAILSLTRMLDYTLRNTDVLYSTLEE 334 EL LQ Q+ PHF +N+L ++R ++ G A+ I+ L+ + Y+L++ D++ T+ + Sbjct: 374 ELANLQSQINPHFLYNTLEAIRMKSLSEGGRTTAKMIVQLSYLFRYSLKSADLV--TIGD 431 Query: 335 EKDYAMSFVRFQEIRSMQQIRVNLELDERAMQAQIPKFTLQLILENSIMHGFAAPFDKEP 394 E + +V IR Q+ + ++E+ +P F LQ ++EN ++HGF D + Sbjct: 432 ELQHVEQYVELFNIRFPNQLTFQVAVEEKHKHYVVPPFILQPLIENFLIHGFKRERD-DN 490 Query: 395 WIRVVAETEDELLILRITDNGNGMDQATLQRLFQPERKQHRARRSSGLSLINLQQRFRLE 454 I ++ + +++ L ++I DNG G+ + ++ + ER S + L N+ QR RL Sbjct: 491 QINIIIQEKEQTLQIQIMDNGKGIPRKKVEEI--NERLSMTENSSHSIGLFNVNQRLRLR 548 Query: 455 YGSGFGIRVASEHGQFTEVTMTLPLMTTD 483 YG FG+ V SE T VT+ P++ ++ Sbjct: 549 YGERFGVSVQSEPDVCTIVTIRTPMIISE 577 >BH1122 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 586 Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/409 (23%), Positives = 176/409 (43%), Gaps = 35/409 (8%) Query: 78 GLLVIEMNGSLIERLLNRAQIHAQNAVFIVSGEGQLLF----RNENMLKPLQEDAELFST 133 G+LV+ ++ S IE L Q ++ + I+ +G+ + ++E++L D L Sbjct: 187 GVLVLNVHASTIETWLK--QKSQESNLMIIDKQGRFVATSDPQHESVLYSPYFDQYLPYQ 244 Query: 134 ATQILKRGDDHGTQNISWAGSPYYLIYKQISSTPWTMFSLIPMYSFHSDSMNIWHTTAIT 193 T ++ G++ ++ P I +T WT+ + P S + I Sbjct: 245 PT--MQTGENDKDEDALEVSMP-------IPNTEWTLKQVTPYSELTEGSRRMAAILVII 295 Query: 194 TAISVVLIAAFFCVLYLKVTLPIAQLSRIVRKAGQ----GQTPETYAYKGFKEIETLNRG 249 AI +V+ L K T PI +L ++ K G+ P Y E L G Sbjct: 296 GAIMIVVALLVTYSLTKKFTTPIYELKNVLSKYPDQDLSGELPSDYR----NEFGELFEG 351 Query: 250 XXXXXXXXXXXXXTIKRGENEKRKLELHRLQEQMRPHFWHNSLNSLRFLAVLNGDNQMAE 309 ++ R +R+ E+ LQ + PHF +N+L+ L ++A+ GD M+ Sbjct: 352 YKGLIRRNNELYRSLHRQYKRQREAEIKALQANINPHFLYNTLDQLNWMAIEKGDRTMSH 411 Query: 310 AILSLTRMLDYTLRNTDVLYSTLEEEKDYAMSFVRFQEIRSMQQIRVNLELDERAMQAQI 369 + +L +ML L N + + LE+E +Y +++ Q+++ +++ +++ + I Sbjct: 412 MLENLGQMLRIGLSNGESILP-LEKEVEYLKYYLKIQKLKMGERLTYTVDVPVMLYRYLI 470 Query: 370 PKFTLQLILENSIMHGFAAPFDKEPWIRVVAETEDELLILRITDNGNGMDQATLQRLFQP 429 PK TLQ +EN +HGF D E IR + + +++ I DNG G FQP Sbjct: 471 PKLTLQPFVENCFIHGFQDGRDGEVVIRAMEDQNH--IVMTIQDNGIG---------FQP 519 Query: 430 ERKQHRARRSSGLSLINLQQRFRLEYGSGFGIRVASEHGQFTEVTMTLP 478 + G + N+ +R + + + V + T V + +P Sbjct: 520 VTTKRSKLDMGGYGIRNVMERLDVYFDRYASVHVTGDEQGGTLVKIIIP 568 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,923,217 Number of extensions: 1250568 Number of successful extensions: 4520 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 4474 Number of HSP's successfully gapped: 23 Length of query: 491 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 381 Effective length of database: 25,691,691 Effective search space: 9788534271 Effective search space used: 9788534271 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)