BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0023.p (341 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1889 [K] COG2378 Predicted transcriptional regulator 374 e-103 lin0383 [K] COG2378 Predicted transcriptional regulator 136 4e-32 mlr3764 [K] COG2378 Predicted transcriptional regulator 84 3e-16 mll3208 [K] COG2378 Predicted transcriptional regulator 74 4e-13 BH0411 [K] COG2378 Predicted transcriptional regulator 74 5e-13 >BH1889 [K] COG2378 Predicted transcriptional regulator Length = 325 Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/343 (53%), Positives = 231/343 (67%), Gaps = 31/343 (9%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 MSK+KRL++LMM +NRKR+FTVKELA EF VS RTILRDLQEL ELGVPLYSEVGPHGGY Sbjct: 1 MSKAKRLMELMMVINRKRRFTVKELAEEFSVSSRTILRDLQELSELGVPLYSEVGPHGGY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 +VLNER+LPPIAFTEEEAVAIFF HALRH+ LPF+ ES + KFY YM DV++RID Sbjct: 61 EVLNERVLPPIAFTEEEAVAIFFTVHALRHFSALPFQAESSSVNHKFYSYMPEDVKERID 120 Query: 121 EMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDYETKGKRMDRAIQPIGIYASNGLW 180 ++K+R DF TP R PYL LL+AA Q V+ I+YET ++ R IQPIG+YA +G W Sbjct: 121 QLKNRFDFETPMRPLATPYLPTLLDAAIKQNVVSIEYETSQEKTKREIQPIGVYARDGFW 180 Query: 181 YCPAYCFLRGGIRVFRCDRIHTADYAVSGPAPLDLRHVLLGNKESCSNLEQAGNTGLQQE 240 YCP+YCFLR +R+FRCDRI + PL+ RHV LGN +S Sbjct: 181 YCPSYCFLREDMRLFRCDRITYVTEQTTN-NPLNFRHVHLGNWQSY-------------- 225 Query: 241 PGLEISKQRERATSKKNERTRL--YIGLTDEGVQACEAELWSSSLLHIREDGTGWLEGDI 298 K ER L Y+ L+ +GVQ C AE W LHIR+DG+GWLEG Sbjct: 226 --------------MKQERNVLDFYVELSQDGVQRCVAEQWLKPHLHIRQDGSGWLEGPF 271 Query: 299 PHKDLPFFARFVIGLCNEAAVKEPQELVRAVKELLAGMLAKYK 341 P ++P+F+ + IG ++A VK+P +LV +K+ L +L+KY Sbjct: 272 PESEVPYFSYYFIGFGHDATVKQPVQLVTLIKKSLRELLSKYN 314 >lin0383 [K] COG2378 Predicted transcriptional regulator Length = 315 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 4/202 (1%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 M+KS+RL D+M+ +N K F + E+ ++GVS T +RD++ L E+G+P+YSE G +G Y Sbjct: 1 MNKSERLNDMMLFLNDKNTFQLSEIMAKYGVSRSTAIRDIKSLEEIGMPIYSERGRNGHY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRD--R 118 QVL R+L PI F +E A++F+ L+ Y+ PF KF H +S + + R Sbjct: 61 QVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEKLKTKFEHCLSAEKIEMLR 120 Query: 119 IDEMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDYETKGKRMDRAIQPIGIYASNG 178 E + ++ Q EF L I+L+ +KV QI+Y+ G +Q I ++ G Sbjct: 121 KTEEVFSLGYIKHNNQCEF--LDIILQFTMEEKVCQINYDKNGTEKTYIVQFYNISSAYG 178 Query: 179 LWYCPAYCFLRGGIRVFRCDRI 200 WY +Y F ++VFRCDRI Sbjct: 179 QWYVTSYNFKDKRMQVFRCDRI 200 >mlr3764 [K] COG2378 Predicted transcriptional regulator Length = 239 Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 10/206 (4%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 M ++ RL ++ + R T ++L VS RTI RD+ +L GVP+ E G GY Sbjct: 1 MRRADRLFQIVQHLRGGRLVTAQKLGTWLEVSERTIYRDIADLQSTGVPIDGEAGV--GY 58 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 + LPP+ FT +E VA+ + +R + + AL K + +DRI Sbjct: 59 MMREGFDLPPLMFTRDEIVALVAGARMVRAFGGAAMARAADEALVKIGAVLPDTEKDRI- 117 Query: 121 EMKHRIDFVTP---ARQAEFPYLAILLEAATGQKVLQIDY-ETKGKRMDRAIQPIGIYAS 176 R + TP A + ++ A ++VL IDY + G+ R I+P+G++ Sbjct: 118 ---ARTEIHTPMWVVSDAAREAIDLIERAVEKRQVLTIDYCDEAGRGTARDIRPLGLWFW 174 Query: 177 NGLWYCPAYCFLRGGIRVFRCDRIHT 202 +W A+C +R R FR DRI + Sbjct: 175 GKVWTLVAWCEMRDDFRAFRIDRIAS 200 >mll3208 [K] COG2378 Predicted transcriptional regulator Length = 229 Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 6/204 (2%) Query: 1 MSKSKRLLDLMMTVNRKRK-FTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGG 59 MS+S+RLLDL+ + R R+ + + LA E G+S RT+ RD+ L G P+ E G G Sbjct: 1 MSRSERLLDLIQCLRRHRRPVSGQALADELGISIRTLYRDIATLQGQGAPIEGEAGL--G 58 Query: 60 YQVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRI 119 Y + ILPP+ FT+EE AI S + + AL K + D+R+ + Sbjct: 59 YVLKPGFILPPLMFTDEEIEAIVLGSRWVAKQPDQRLSAAAANALAKIAAVLPDDLREDL 118 Query: 120 DEMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDY-ETKGKRMDRAIQPIGIYASNG 178 D + PA E L ++ +A ++ L Y + G R + P + + Sbjct: 119 DASTLLVG--PPAHAIEGIDLGVVRQAIRNERKLGFLYRDAGGAASQRVVWPFALGFFDK 176 Query: 179 LWYCPAYCFLRGGIRVFRCDRIHT 202 + A+C +R R FR DRI Sbjct: 177 VRVVVAWCEMRQDFRHFRADRISA 200 >BH0411 [K] COG2378 Predicted transcriptional regulator Length = 331 Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 12/205 (5%) Query: 3 KSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGYQV 62 K+ RLL+++ + K T +L VS RTILRD+ L LG+P+ SE G GG+++ Sbjct: 2 KADRLLEIVALLQNHEKLTTHQLVDHLHVSSRTILRDMDTLSALGIPIVSERGRAGGWKL 61 Query: 63 LNE--RILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESV--AALQKFYHYMSGDVRDR 118 ++ L ++ TE +A+ I + L+ +P K + L VR Sbjct: 62 MDHFRSQLSGMSMTELKALFILPSDKVLKDLG-IPTKGRDIRLNMLSSLQGNRKHAVRPY 120 Query: 119 IDEMKHRIDFVTPA--RQAEFPYLAILLEAATGQKVLQIDYET-KGKRMDRAIQPIGIYA 175 ++++ P+ R EF ++ +A +K L I YE KG++ +R I P+G+ A Sbjct: 121 LEKVYIDTGTWKPSKERMEEF---NVVQQAVFEEKKLYIVYENAKGEQRERLISPLGLVA 177 Query: 176 SNGLWYCPAYCFLRGGIRVFRCDRI 200 WY A G IR F+ RI Sbjct: 178 KGSAWYVVA-TVETGDIRNFKLSRI 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,299,875 Number of extensions: 1020674 Number of successful extensions: 1908 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 1897 Number of HSP's successfully gapped: 14 Length of query: 341 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 234 Effective length of database: 26,037,693 Effective search space: 6092820162 Effective search space used: 6092820162 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)