BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0022.p (141 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0850 [S] COG2764 Uncharacterized protein conserved in bacteria 110 5e-25 PA1353 [S] COG2764 Uncharacterized protein conserved in bacteria 89 2e-18 CAC1525 [S] COG2764 Uncharacterized protein conserved in bacteria 84 6e-17 CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria 80 1e-15 lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria 72 2e-13 >BH0850 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 148 Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 5/144 (3%) Query: 1 MTLQLNPFILLDGHAQQAIEFYQEVLGAKLLFKQTAGEGPQNPDAPMSEEAKARIAHSVL 60 M L +NP+++LDG Q AIEFYQ+ L A+++ QT G+ P+ P++PM+ K I H+ L Sbjct: 1 MILTMNPYLMLDGDGQAAIEFYQDALNAEVITIQTYGDLPEQPNSPMASVNKDLILHAHL 60 Query: 61 RVGETDFFVADL-----EEGLVLHPGNGINICITADNTAEAEQLYHSLQKGGHVEIELGP 115 ++GE D ++D E H G+ + I +T +N +++ L GG L Sbjct: 61 KLGEMDLMISDQCLDVDPERFPQHSGSPVTIALTTNNVEMTTEVFQKLASGGEEIAPLEK 120 Query: 116 TYFSPAYGMVTDKFGVAFQVFTKR 139 T+FSP YG VTDKFG+ + V T+ Sbjct: 121 TFFSPLYGQVTDKFGITWHVSTQE 144 >PA1353 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 2/139 (1%) Query: 3 LQLNPFILLDGHAQQAIEFYQEVLGAKLLFKQTAGEGPQNPDAPMSEEAKARIAHSVLRV 62 +Q+ P+++ +G+ ++A Y + LG L G+ P+ D P + K +I H+ L V Sbjct: 1 MQIVPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIP--ADWKDKIMHARLVV 58 Query: 63 GETDFFVADLEEGLVLHPGNGINICITADNTAEAEQLYHSLQKGGHVEIELGPTYFSPAY 122 G +D G +I + D+ AEAE+L+++L +GG V++ LGPT+++ ++ Sbjct: 59 GSFALMASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWAASF 118 Query: 123 GMVTDKFGVAFQVFTKRGR 141 GM TD+FGVA+ V ++ R Sbjct: 119 GMFTDRFGVAWMVNCEQDR 137 >CAC1525 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 78/134 (58%), Gaps = 2/134 (1%) Query: 1 MTLQLNPFILLDGHAQQAIEFYQEVLGAKLLFKQTAGEGPQNPDAPMSEEAKARIAHSVL 60 M LQ+ +I +G+ ++A+EFY V AK+ T E P +P + ++ + IA+S + Sbjct: 1 MNLQV--YISFNGNCRKALEFYSRVFEAKINKTVTYKELPSHPKVAIEKDVEELIAYSSI 58 Query: 61 RVGETDFFVADLEEGLVLHPGNGINICITADNTAEAEQLYHSLQKGGHVEIELGPTYFSP 120 + + D+ G+ L GN +++ I ++ + E E L++ L++ G+V +EL TY+S Sbjct: 59 ILKGNYLNMVDVFPGMPLTRGNNVSLTIVSNKSNELEVLFNKLKEDGNVNMELQKTYWSR 118 Query: 121 AYGMVTDKFGVAFQ 134 YG +TDKFG+ + Sbjct: 119 CYGSLTDKFGIEWH 132 >CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 73/133 (54%) Query: 3 LQLNPFILLDGHAQQAIEFYQEVLGAKLLFKQTAGEGPQNPDAPMSEEAKARIAHSVLRV 62 + + +I DG+ ++A+EFY EV K G+ P A +EE K + ++ L V Sbjct: 1 MAIQAYINFDGNCREAVEFYAEVFETKKPKIMVYGDMPPKEGAKFNEETKNLVLNAALEV 60 Query: 63 GETDFFVADLEEGLVLHPGNGINICITADNTAEAEQLYHSLQKGGHVEIELGPTYFSPAY 122 + +D+ G+ L GN I++ + ++ E + +++ L++ G V +EL T++S Y Sbjct: 61 KGSTIMFSDIVPGMKLVVGNNISLVVIINDIDELKLIFNRLKEKGTVLMELQETFWSKCY 120 Query: 123 GMVTDKFGVAFQV 135 G V DKFG+ +Q+ Sbjct: 121 GYVVDKFGIEWQL 133 >lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 135 Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 3 LQLNPFILLDGHAQQAIEFYQEVLGAKLLFKQTAGEGPQNPDAPMSEEAKARIAHSVLRV 62 + LN ++ ++ AI FY+E+ G K T GE ++ + P+ + K + ++ L + Sbjct: 1 MTLNVYLNFRTQSRDAIAFYEEIFGTKCTDLMTYGE-IESAEEPIEDSLKDLVMNASLVL 59 Query: 63 GETDFFVADLEEGLVLHPGNGINICITADNTAEAEQLYHSLQKGGHVEIELGPTYFSPAY 122 +D+ + + L G+ I + I + + + +H L +GG++ + LG T++S Y Sbjct: 60 DGVKVMFSDVPKSMPLTFGDNITLVIDTTDEIKLTKQFHQLAEGGNIIMPLGKTFWSEKY 119 Query: 123 GMVTDKFGVAFQV 135 G VTDKFG+ +Q+ Sbjct: 120 GQVTDKFGIGWQL 132 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,645,592 Number of extensions: 411514 Number of successful extensions: 1744 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 1743 Number of HSP's successfully gapped: 7 Length of query: 141 Length of database: 38,378,431 Length adjustment: 96 Effective length of query: 45 Effective length of database: 27,306,367 Effective search space: 1228786515 Effective search space used: 1228786515 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 110 (47.0 bits)