BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0004.p (337 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3088 [S] COG3181 Uncharacterized protein conserved in bacteria 116 5e-26 SMc00499 [S] COG3181 Uncharacterized protein conserved in bacteria 113 3e-25 AGpA473 [S] COG3181 Uncharacterized protein conserved in bacteria 110 4e-24 SMa1927 [S] COG3181 Uncharacterized protein conserved in bacteria 105 1e-22 AGl3124 [G] COG3090 TRAP-type C4-dicarboxylate transport system,... 96 8e-20 >RSc3088 [S] COG3181 Uncharacterized protein conserved in bacteria Length = 317 Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 119/242 (49%), Gaps = 6/242 (2%) Query: 41 DFPGKPITLIVPYXXXXXXXXXXXXXXXXXEKVLGQPVIVVNRTGGGGSVGLMEGAGAKG 100 D+P KPI +IV Y LGQPV+V NR G GGS+G+ A + Sbjct: 19 DYPTKPIRIIVAYPTGGISDNVARALGEKLAAQLGQPVVVENRAGAGGSIGMDAVAKSAP 78 Query: 101 DGYTVTFLP-AELTILPHLGLLPITYEK-FKPIAQTNFDPSAITVRQGAPWQTVNEFLGF 158 DGYT+ F + LT+ PH G LP +K P+ + P + ++ + L Sbjct: 79 DGYTLGFSAVSPLTLNPHFGKLPYDPQKDIAPVVNVMYAPMILLGTSSFTGKSFADMLAQ 138 Query: 159 AKAHPGELKMGNAGTGSIWHLAAITLERETGVKFAHIPFEGAGPAVSALMDGFVDAVP-- 216 ++A PG ++ +G G++ HLA ++ + V IP++G G ++ + G V+ + Sbjct: 139 SRAKPGTIRWSTSGMGTVGHLALEQVKVQAHVDITLIPYKGGGQQLTDALGGQVEVMSTN 198 Query: 217 VSPAEVKKYVDEGKLRTLAVNADERSDALPGVPTLEELTGIHVNFTGTWRGLAVPKDTPD 276 V P + +++ GKLR LAV A R DALP VPT EL N T+ G+ P TP Sbjct: 199 VGP-TLMQHISSGKLRPLAVGAPHRLDALPTVPTFAELGYAKANMASTF-GVFAPAKTPA 256 Query: 277 AI 278 I Sbjct: 257 PI 258 >SMc00499 [S] COG3181 Uncharacterized protein conserved in bacteria Length = 318 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 2/261 (0%) Query: 40 ADFPGKPITLIVPYXXXXXXXXXXXXXXXXXEKVLGQPVIVVNRTGGGGSVGLMEGAGAK 99 A+FP KP+TL+V EK G V V NR GG G+VG+ + Sbjct: 24 AEFPEKPVTLVVWAGAGGALDTYGRKLAELLEKEAGWTVKVDNRPGGSGAVGVSQIMTQP 83 Query: 100 GDGYTVTFLPAELTILPHLGLLPITYEKFKPIAQTNFDPSAITVRQGAPWQTVNEFLGFA 159 DGY + L LT GL+P E F+ + +PS++ V + +++V++F + Sbjct: 84 ADGYNILVLTGTLTFGIAQGLIPFELEDFRLLRAMQSEPSSLAVLSDSQFKSVDDFTKYM 143 Query: 160 KAHPGELKMGNAGTGSIWHLAAITLERETGVKFAHIPFEGAGPAVSALMDGFVDAVPVSP 219 K +P LK+G G L ++ G + IP + +G L+ +DA ++P Sbjct: 144 KDNPNGLKVGGHAPGGFHQYMLYQLMKKGGFESGWIPHDASGKVTLGLLGKHLDAAMMTP 203 Query: 220 AEVKKYVDEGKLRTLAVNADERSDALPGVPTLEELTGIHVNFTGTWRGLAVPKDTPDAIA 279 + V G+++ L V+ DERS LP VPT +E G + WRG+AV TPD Sbjct: 204 STGLAQVKSGEIKLLGVSTDERSAFLPDVPTFKE-QGYDIE-GAIWRGVAVKAGTPDDAV 261 Query: 280 DILAGAFIKGTEDKAFREYMN 300 + A K T + ++++ Sbjct: 262 GAIQAAVDKVTASEDWKKFQT 282 >AGpA473 [S] COG3181 Uncharacterized protein conserved in bacteria Length = 409 Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 19/290 (6%), Positives = 44/290 (15%), Gaps = 21/290 (7%) Query: 39 NADFP-GKPITLIVPYXXXXXXXXXXXXXXXXXEKVLGQPVIVVNRTGGGGSVGLMEGAG 97 A T I L + V Sbjct: 22 LALVKRQIATTKIEEGKSADKWRVFRDASEAREVLGLQDRSLAVLDALLSFYPENELRQD 81 Query: 98 AKGDGYTVTFL--PAELTILPHLGLLPITYEKFKP-----IAQTNFDPSAITVRQGAPWQ 150 A+ + I + D + + Sbjct: 82 AQLVVFPSNIQLSIRAHGIAGATLR------RHLALLVEAGLIIRKDSANGKRYARKDDE 135 Query: 151 TVNEFLGFAKAHPGELKMGNAGTGSIWHLAAITLERETGVKFAHIPFEGAGPAVSALMDG 210 E P ++ + A R + + + +G Sbjct: 136 GSIEHAFGFDISPLLMRAEELACLAQQVAADRIAFRRAKESLTICRRDIRKLITAGVEEG 195 Query: 211 FVDAVPVSPAEVKKYV--DEGKLRTLAVNADERSDALPGVPTLEELTGIHVNFTGTWRGL 268 ++Y+ R +N A + + + Sbjct: 196 ASGDWSGL---EERYLALVGQIPRNPTLNELSDLGAKMASLREDI-LKLLN-SDDFSSEM 250 Query: 269 AVPKDTPDAIADILAGAFIKGTEDKAFREYMNVNGLGLLVKDGKAFSRQL 318 + + E + E + + Sbjct: 251 TTNDAQIERHIQNSNTNHLNELEPSSGNEQGAKPSQNKQAGHVPIKAFPI 300 >SMa1927 [S] COG3181 Uncharacterized protein conserved in bacteria Length = 330 Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 126/267 (47%), Gaps = 12/267 (4%) Query: 41 DFPGKPITLIVPYXXXXXXXXXXXXXXXXXEKVLGQPVIVVNRTGGGGSVGLMEGAGAKG 100 DFP + +TL+VP+ + LGQ VIV N G GG++G A A+ Sbjct: 32 DFPDRTVTLVVPFAAGGSTDVVARIIAQKMSEDLGQQVIVQNVAGAGGNLGAANVARAEP 91 Query: 101 DGYTVTFLPAELTILPHLGLLPITYE---KFKPIAQTNFDPSAITVRQGAPWQTVNEFLG 157 DGYT+ L L L Y+ F PI+ P+ + V P +TV E L Sbjct: 92 DGYTILMATVATHALNPLILKTKPYDPEKDFAPISLLVVVPNVLVVNPELPAKTVQELLA 151 Query: 158 FAKAHPGELKMGNAGTGSIWHLAAITLERETGVKFAHIPFEGAGPAVSALMDGFV----D 213 KA P + ++G G+ HL+ ++ GV+ HIP++G+GPA++ ++ V D Sbjct: 152 LLKAEPEKYAYASSGNGTPLHLSGELFKKMAGVEMQHIPYKGSGPALNDVLGNQVPIMFD 211 Query: 214 AVPVSPAEVKKYVDEGKLRTLAVNADERSDALPGVPTLEELTGIHVNFTGTWRGLAVPKD 273 +P S +K G LR LAV ER+ + P +PT+ E +GI T TW L P + Sbjct: 212 NLPSSSGHIKA----GTLRALAVTTAERASSFPDIPTIAE-SGIPGYETYTWNALFAPAN 266 Query: 274 TPDAIADILAGAFIKGTEDKAFREYMN 300 TP + L A K D A ++ M Sbjct: 267 TPQPVIARLNEAAKKAMADPAVQKRME 293 >AGl3124 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component Length = 144 Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 0/245 (0%), Positives = 0/245 (0%), Gaps = 14/245 (5%) Query: 42 FPGKPITLIVPYXXXXXXXXXXXXXXXXXEKVLGQPVIVVNRTGGGGSVGLMEGAGAKGD 101 + + Q + + Sbjct: 33 NFLRFRDRPLYSDGFEHVKTTSRSAYYEGYASAFQQIATALNISTELIYAGSQLMTLLPK 92 Query: 102 GYTVTFLPAELTILPHLGLLPITYE---KFKPIAQTNFDPSAITVRQGAPWQTVNEFLGF 158 V + L I Sbjct: 93 ESEVWDDIVIVRYDSFADLCSIIDTPEY 152 Query: 159 AKAHPGELKMGNAGTGSIWHLAAITLERETGVKFAHIPFEGAGPAVSALMDGFV----DA 214 Sbjct: 153 212 Query: 215 VPVSPAEVKKYVDEGKLRTLAVNADERSDALPGVPTLEELTGIHVNFTGTWRGLAVPKDT 274 Sbjct: 213 ------ 266 Query: 275 P-DAI 278 Sbjct: 267 271 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,209,795 Number of extensions: 1185357 Number of successful extensions: 2165 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 2127 Number of HSP's successfully gapped: 20 Length of query: 337 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 230 Effective length of database: 26,037,693 Effective search space: 5988669390 Effective search space used: 5988669390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)