BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0003.p (800 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0483 [K] COG2207 AraC-type DNA-binding domain-containing proteins 92 3e-18 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 80 1e-14 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 77 1e-13 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 72 3e-12 BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins 72 5e-12 >BH0483 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 769 Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 120/534 (22%), Positives = 230/534 (43%), Gaps = 63/534 (11%) Query: 277 PFAHVKIEGKAYMANQTFSNVTGWRMLSLVPMEQLLK--NVTTARNM-----MLMLSLIS 329 P +H Y S+ W +S++ +L K N A M +L+LSL+ Sbjct: 263 PLSH-----STYTVTFRTSDYNQWTYVSVISSRELAKQSNAIGAFTMYISAGVLLLSLLY 317 Query: 330 IAVGCSAIYYYNFAAFRPLKRINKLLTPDMAAAG------------QGNLYDLEPVIGKL 377 VG IY RP++ + +++T +A +++++ + +L Sbjct: 318 SWVGSRRIY-------RPVQELYQMITATFSAGSAKKPPKDEFELIHAHIHNVLDLNNEL 370 Query: 378 VGDFQSKSLVADWSLPELRSKYVNDLISRSMGTQEMRTKWE--HYFSDWREGSFQLLIIS 435 Q + + +L+ +V +LI M E+ TK+E Y DWR+ +L + Sbjct: 371 EEKLQGQ-------IKQLKQFFVLNLIKGHMSPSEIETKYETFQYPKDWRQ--LHVLTLQ 421 Query: 436 IDRYSQWAASFVEEDQMLLKYAMNNIVLEYFEPAWRVVTTAPQRDS----LAXXXXXXXX 491 ID S + +E++ +L +++NN+V E P +T A ++ L Sbjct: 422 ID--SLEGTKYAKEEKDVLLFSINNLV-ETLIPEVERLTPALLNNTVVLILLTNVDQEQK 478 Query: 492 XXXXXXXXXXXXXXXXQEVLKISVSIGAGSTASGVAQAARSYDESMHALSCRLYEGYSLV 551 ++ L ISVSIG + + +YDE + AL R+ G V Sbjct: 479 RDGFVREKAEAIMNEVRQQLDISVSIGVSLPYDDITKTQEAYDEGIEALKYRIKLGCQSV 538 Query: 552 HAYPEAESKYTESFGAA-DEAWRQEVLHALKSSDGETALKRVRRGTGEIRKLGIQPQK-- 608 + + +T SF + E+ ALK D + I + + P + Sbjct: 539 IFF--SNLAHTHSFHTYYPKQQENELFDALKLGDKSNVKDHLDALIDGIFQKDLHPSQYQ 596 Query: 609 --VFRSINDLLE--EIMSIATAGGYPLPAELADYTWHQVTTMDLAEIEDMLCRIVIHMAD 664 + R +N+ ++ + + I + Y L D + + T+D E++ +I + Sbjct: 597 ISLLRLLNNTIQLLQTLGIDSVDVYD-KKTLFDQLF-SLQTID--EVKQWFFTKLIAPSV 652 Query: 665 VLGAHRQSKEYLLVQN-LIAYMESHLQENIGLQDIAAHVNMGVSSVSTIFKEETGSTVYD 723 A R +Y + + +I +++ + L+ IA ++ + +S+IF++ET + + Sbjct: 653 HTVAERMDSQYRTISDQIIHIIQNEFDMELTLESIAERLHYNPNYLSSIFRKETNISFSE 712 Query: 724 YLTNLRIDKACGLLQDSGLKIADIALQVGYQNENSFIRAFRKIKSTTPGKFRES 777 YL++ R+ A L ++ + I +IA ++ Y N +FIR+F+K + TPGK+R+S Sbjct: 713 YLSSYRLAMAKKWLLETSMPIREIAERLCYGNSQNFIRSFKKKEGMTPGKYRQS 766 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 22/212 (10%) Query: 575 EVLHALKSSDGETALKRVRRGTGEIRKLGIQP--------QKVFRSINDLLEEI-MSIAT 625 +++ A+KS DGE AL+ I + P Q++F + LL E+ + T Sbjct: 318 KLIEAIKSGDGEKALQAFDHYVQAILRCSKHPLHDMRKYLQQLFIILGRLLNEMGLHWET 377 Query: 626 AGGYPLPAELADYTWHQVTTMDLAEIEDMLCRIVIHMADVLGAHRQSKEYLLVQNLIAYM 685 A + + T HQVT +EI +H+ L R + E L+ Y+ Sbjct: 378 AQDFARFS-----TVHQVTEHGKSEI--------LHIVRTLQEWRTTDEQSLMLLARDYV 424 Query: 686 ESHLQENIGLQDIAAHVNMGVSSVSTIFKEETGSTVYDYLTNLRIDKACGLLQDSGLKIA 745 H +E + L D+A H+ + VS +FKE T +Y+T LR++ A LL + + Sbjct: 425 HDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKSLK 484 Query: 746 DIALQVGYQNENSFIRAFRKIKSTTPGKFRES 777 +I ++GY++ N F R F+K+ +P +R+S Sbjct: 485 EITYEIGYKDPNYFSRVFKKLTGKSPSDYRKS 516 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 63/102 (61%) Query: 678 VQNLIAYMESHLQENIGLQDIAAHVNMGVSSVSTIFKEETGSTVYDYLTNLRIDKACGLL 737 + + Y+++HL + IGL+D+A V++ S +S +FKE+T T +YLT R+ A LL Sbjct: 156 IHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLL 215 Query: 738 QDSGLKIADIALQVGYQNENSFIRAFRKIKSTTPGKFRESSK 779 + I+DIA + GYQ FI+ F++ + TP ++R+ ++ Sbjct: 216 VSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRKGTE 257 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 8/122 (6%) Query: 654 MLCRIVIHMADVLGAHRQSKEYL----LVQNLIAYMESHLQENIGLQDIAAHVNMGVSSV 709 LC + H+ H+Q E + L++ ++ Y+E HL ENI LQDIA + + + + Sbjct: 402 FLCEQIEHIC----YHQQWDENIKHKQLIEQVMIYIEKHLAENITLQDIADELYISRNYL 457 Query: 710 STIFKEETGSTVYDYLTNLRIDKACGLLQDSGLKIADIALQVGYQNENSFIRAFRKIKST 769 IFK+ G + +Y+T LR++KA ++Q+ I +++ +VGY N F F+K Sbjct: 458 GQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFLIYEVSEKVGYVNPAYFTTMFKKYTGY 517 Query: 770 TP 771 TP Sbjct: 518 TP 519 >BH0851 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 261 Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 57/96 (59%) Query: 682 IAYMESHLQENIGLQDIAAHVNMGVSSVSTIFKEETGSTVYDYLTNLRIDKACGLLQDSG 741 I+Y+ +HL E + L IA++V S +FKE+TG + Y+++LR+ KA LL ++ Sbjct: 12 ISYIHNHLYEPLSLSHIASYVGYSSYHFSRLFKEKTGLSPLYYVSSLRLQKAKELLLNTN 71 Query: 742 LKIADIALQVGYQNENSFIRAFRKIKSTTPGKFRES 777 L + DI L++G Q+ +F F K +P FRES Sbjct: 72 LTVRDIGLEIGQQSLGTFTTRFTKCVGMSPSHFRES 107 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 54,699,641 Number of extensions: 2126880 Number of successful extensions: 7614 Number of sequences better than 1.0e-05: 798 Number of HSP's gapped: 7619 Number of HSP's successfully gapped: 798 Length of query: 800 Length of database: 38,378,431 Length adjustment: 114 Effective length of query: 686 Effective length of database: 25,230,355 Effective search space: 17308023530 Effective search space used: 17308023530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)