BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0563.0007.p
         (90 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA3479 [P] COG1918 Fe2+ transport system protein A                     49   2e-06
CAC1029 [P] COG1918 Fe2+ transport system protein A                    47   6e-06

>MA3479 [P] COG1918 Fe2+ transport system protein A
          Length = 82

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query: 31 QGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRVSNTTIALRREESELI 80
          +G  R+RLLD+G V G  + V +++PLGDP  F++    ++LR+ E+E +
Sbjct: 26 RGSSRKRLLDMGMVPGTVLNVTKKAPLGDPVDFKLKGYNLSLRKTEAEAV 75


>CAC1029 [P] COG1918 Fe2+ transport system protein A
          Length = 78

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%)

Query: 12 IPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRVSNTTIA 71
          I L+E    SK+ + GI  +  +RR+++D+G V G  + +  ++P+GDP A R+   +++
Sbjct: 5  IGLNEVEIKSKVKVIGIVPESKVRRKIMDMGIVRGTEIYIEGKAPMGDPIALRLRGYSLS 64

Query: 72 LRREESE 78
          LR+ E++
Sbjct: 65 LRKSEAK 71


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.140    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,366,076
Number of extensions: 217184
Number of successful extensions: 929
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 2
Length of query: 90
Length of database: 38,378,431
Length adjustment: 60
Effective length of query: 30
Effective length of database: 31,458,391
Effective search space: 943751730
Effective search space used: 943751730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)