BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0563.0006.p (243 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1031 [P] COG0370 Fe2+ transport system protein B 156 2e-38 MA3477 [P] COG0370 Fe2+ transport system protein B 155 4e-38 MTH213 [P] COG0370 Fe2+ transport system protein B 155 4e-38 MTH1361 [P] COG0370 Fe2+ transport system protein B 147 1e-35 STM0051 [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase 136 4e-32 >CAC1031 [P] COG0370 Fe2+ transport system protein B Length = 683 Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 3 QFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGTYS 62 VA AGNPN GK++LFN LTG +QH GNW G TV EG+ + VDLPGTYS Sbjct: 5 NLVVALAGNPNCGKTSLFNELTGSKQHVGNWPGVTVEKKEGKLKFEGREITIVDLPGTYS 64 Query: 63 LYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDEAR 122 L + S DE ARD+I+ ++PDV + V+DA +LERNL L Q+LE + V+ +N++DEA Sbjct: 65 LGAYSEDEVVARDFILKDKPDVVINVVDACNLERNLYLTTQILETGAKVVLALNMMDEAN 124 Query: 123 RLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEIEQ 182 IDIN++ + K +G+PV A K GI+ L+ ++ + + I+Y +I++ Sbjct: 125 TRNIDINIEKLQKSIGIPVVPTVATKKQGIKELVKNAIKLGDSE-SEELYTIDYGSDIQK 183 Query: 183 ---GIAELIPMVEQTVGSRYPARWIA 205 GI I E +V YP W++ Sbjct: 184 EVDGIKAAID--EASVTLEYPKAWVS 207 >MA3477 [P] COG0370 Fe2+ transport system protein B Length = 670 Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 122/202 (60%), Gaps = 3/202 (1%) Query: 6 VAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGTYSLYS 65 VA AGNPN GK+T+FN +TG RQ GNW G TV G + H VDLPGTYSL + Sbjct: 13 VALAGNPNVGKTTVFNAITGARQKVGNWPGVTVEKKVGTKEYAGHVLEIVDLPGTYSLTA 72 Query: 66 NSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDEARRLG 125 SADE ARDYI+ E+PDV + +LD+T+LERNL L+ Q+LE+ V +N+ D + R G Sbjct: 73 YSADEVVARDYILEEKPDVVVQILDSTNLERNLYLSTQLLEMGTNLVFALNMSDLSERRG 132 Query: 126 IDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEIEQGIA 185 ++++ + K LG + +A GI ALLD I A P I Y ++E+ I Sbjct: 133 DEVDILRLEKLLGTSLIKTTANEGKGINALLDAIITKADSE-AHLPHEIGYGKDVEEKIR 191 Query: 186 EL--IPMVEQTVGSRYPARWIA 205 L I + + T+ +RYP+RW++ Sbjct: 192 HLENILVKDMTLLNRYPSRWLS 213 >MTH213 [P] COG0370 Fe2+ transport system protein B Length = 337 Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 15/204 (7%), Positives = 34/204 (16%), Gaps = 3/204 (1%) Query: 2 SQFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGTY 61 + A +P + + Q G + Sbjct: 6 QPRKGSVAFSPRKRAARETPRVKSWPQVDEPGLLALAGYKAGMTHVMMVDNQKNSPTEGM 65 Query: 62 SLYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDEA 121 + + E ++ T E L + A Sbjct: 66 EVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKLTPPADDYDQEAA 125 Query: 122 RRLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEIE 181 R+ V A + + T + + Sbjct: 126 IEKIRSNMEYVADVRVIVHTNPRLASVPKKKPEVFECGLGGKTP--EEKFEYALEILGKD 183 Query: 182 QGIAELIPMVEQTVGSRYPARWIA 205 +E+ V + + Sbjct: 184 VRASEIFSEGAF-VDAIAVTKGKG 206 >MTH1361 [P] COG0370 Fe2+ transport system protein B Length = 268 Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 14/199 (7%), Positives = 33/199 (16%), Gaps = 6/199 (3%) Query: 6 VAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGTYSLYS 65 V + + L A I + L Sbjct: 4 VDLSIFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTY 63 Query: 66 NSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDEARRLG 125 + R + +L + E + +G Sbjct: 64 MDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLVDIG 123 Query: 126 IDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEIEQGIA 185 D K + + + + + + + Sbjct: 124 ADKLALCREKLTVNRIMSFRV-----VRLGKEILIEPDEPEDRYWGYEVLDTRRNLAESL 178 Query: 186 ELIPMVEQTVGSRYPARWI 204 + + V + A I Sbjct: 179 KTVGADVV-VATSRNASPI 196 >STM0051 [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase Length = 306 Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 16/182 (8%), Positives = 37/182 (20%) Query: 6 VAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGTYSLYS 65 A A + L + T + + + + + + P L Sbjct: 19 AAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQLLHFWNSDIPLAQGAATPLLRPLRD 78 Query: 66 NSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDEARRLG 125 + + + + L +T A+ + I Sbjct: 79 AAYVHGESGMEGYDFVDHQRQPLAKPAFIAIRDVLMNAPEPMTLVAIGPLTNIALLLMHY 138 Query: 126 IDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEIEQGIA 185 + L A + E A + + + D Q + Sbjct: 139 PECACNIRRLVLMGGSAGRGNFTPNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAML 198 Query: 186 EL 187 Sbjct: 199 SP 200 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,924,978 Number of extensions: 620418 Number of successful extensions: 11903 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 11902 Number of HSP's successfully gapped: 11 Length of query: 243 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 140 Effective length of database: 26,499,029 Effective search space: 3709864060 Effective search space used: 3709864060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)